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                                  • RBMS3
                                  BRAIN THALAMUS Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
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                                  VALIDATION
                                  Brain proteome
                                  Thalamus
                                  THALAMUS - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  HPA Brain:36.2 nTPM
                                  FANTOM5:11.7 Scaled Tags Per Million
                                  Pig:16.0 nTPM
                                  Mouse:16.4 nTPM
                                  Allen mouse:4.2 Expression energy

                                  THALAMUS - HPA Brain RNA-seq
                                  Max nTPM 36.2
                                  Sample id Sample description nTPM
                                  Anterior thalamic nucleus, ventral
                                  nTPM: 24.6
                                  2497 Male, age 66, unknown 28.6
                                  2396 Male, age 61, right hemisphere 25.3
                                  2032 Female, age 42, unknown 19.8
                                  Centromedial thalamic nucleus
                                  nTPM: 22.5
                                  2401 Male, age 76, right hemisphere 29.1
                                  2279 Female, age 85, left hemisphere 15.8
                                  Habenula
                                  nTPM: 34.3
                                  2203 Male, age 61, left hemisphere 41.0
                                  1957 Male, age 80, both hemispheres 38.3
                                  2276 Male, age 66, unknown 34.4
                                  2252 Male, age 62, unknown 23.5
                                  Lateral geniculate body
                                  nTPM: 25.7
                                  2857 Male, age 74, right hemisphere 33.2
                                  2659 Male, age 66, unknown 30.0
                                  2106 Female, age 67, right hemisphere 26.5
                                  2575 Female, age 94, right hemisphere 26.5
                                  2841 Male, age 80, both hemispheres 23.5
                                  2399 Male, age 61, left hemisphere 23.1
                                  2035 Female, age 72, unknown 22.2
                                  1953 Male, age 62, unknown 21.0
                                  Lateral thalamic nuclei
                                  nTPM: 24.4
                                  1903 Male, age 76, left hemisphere 32.3
                                  2577 Male, age 74, both hemispheres 27.6
                                  2661 Female, age 72, unknown 26.3
                                  2573 Female, age 94, left hemisphere 21.1
                                  2765 Female, age 67, both hemispheres 14.6
                                  Medial dorsal thalamic nucleus
                                  nTPM: 28.8
                                  2283 Male, age 80, right hemisphere 44.7
                                  2572 Female, age 94, right hemisphere 40.9
                                  1859 Male, age 76, both hemispheres 33.7
                                  1971 Male, age 61, right hemisphere 33.7
                                  2026 Male, age 62, unknown 32.6
                                  2402 Female, age 67, both hemispheres 29.8
                                  2498 Male, age 66, unknown 27.8
                                  1810 Male, age 48, unknown 27.7
                                  2576 Male, age 74, both hemispheres 24.9
                                  1930 Female, age 42, unknown 24.4
                                  2660 Female, age 72, unknown 20.0
                                  2492 Male, age 75, right hemisphere 19.5
                                  2039 Female, age 72, unknown 14.5
                                  Medial geniculate body
                                  nTPM: 30.6
                                  1811 Female, age 42, unknown 41.8
                                  2217 Female, age 72, unknown 37.0
                                  2207 Male, age 80, right hemisphere 34.2
                                  2650 Female, age 94, left hemisphere 31.6
                                  2657 Male, age 74, right hemisphere 30.8
                                  2049 Male, age 76, both hemispheres 24.3
                                  2571 Male, age 75, right hemisphere 14.4
                                  Nucleus reuniens
                                  nTPM: 21.4
                                  2205 Male, age 80, left hemisphere 27.0
                                  2212 Female, age 67, left hemisphere 19.4
                                  2210 Female, age 85, left hemisphere 17.7
                                  Nucleus rhomboideus
                                  nTPM: 28.2
                                  2206 Male, age 80, both hemispheres 35.0
                                  2213 Female, age 67, left hemisphere 28.1
                                  2280 Female, age 85, left hemisphere 21.6
                                  Posterior thalamic nucleus
                                  nTPM: 36.2
                                  2649 Female, age 94, both hemispheres 43.8
                                  2266 Male, age 76, right hemisphere 34.8
                                  2655 Male, age 74, right hemisphere 34.4
                                  2495 Female, age 67, right hemisphere 31.7
                                  Pulvinar
                                  nTPM: 28.9
                                  2214 Male, age 76, right hemisphere 34.7
                                  2582 Female, age 72, unknown 33.3
                                  2496 Female, age 67, right hemisphere 33.2
                                  1929 Male, age 48, unknown 31.9
                                  2724 Male, age 74, right hemisphere 29.4
                                  2499 Male, age 66, unknown 28.3
                                  1972 Male, age 62, unknown 26.8
                                  1932 Male, age 80, right hemisphere 25.2
                                  1899 Female, age 42, unknown 24.7
                                  2398 Male, age 61, left hemisphere 21.9
                                  Subthalamic nucleus
                                  nTPM: 24.3
                                  2658 Male, age 74, both hemispheres 36.5
                                  2282 Male, age 61, both hemispheres 28.1
                                  2275 Male, age 66, unknown 26.9
                                  2056 Female, age 72, unknown 21.5
                                  2124 Male, age 62, unknown 21.1
                                  2216 Male, age 48, unknown 20.4
                                  2406 Female, age 72, unknown 20.0
                                  2779 Female, age 42, unknown 19.7
                                  Ventral posterolateral thalamic nucleus
                                  nTPM: 27.8
                                  2197 Male, age 80, both hemispheres 38.6
                                  2578 Male, age 74, both hemispheres 32.5
                                  2397 Male, age 61, right hemisphere 25.4
                                  2740 Male, age 76, right hemisphere 24.7
                                  2570 Male, age 75, right hemisphere 23.1
                                  2581 Female, age 72, unknown 22.4
                                  Ventral posteromedial thalamic nucleus
                                  nTPM: 32.1
                                  2758 Male, age 80, both hemispheres 44.5
                                  2202 Male, age 61, left hemisphere 38.3
                                  2127 Male, age 76, right hemisphere 31.6
                                  2653 Male, age 74, both hemispheres 29.9
                                  2281 Male, age 75, right hemisphere 15.9
                                  Ventral thalamic nuclei
                                  nTPM: 25.8
                                  1860 Male, age 76, both hemispheres 33.7
                                  2285 Male, age 62, unknown 32.6
                                  2204 Male, age 80, both hemispheres 29.2
                                  2580 Male, age 66, unknown 27.0
                                  1845 Male, age 48, unknown 26.3
                                  1912 Female, age 42, unknown 23.5
                                  2652 Male, age 74, left hemisphere 23.0
                                  2858 Female, age 72, unknown 19.9
                                  2291 Female, age 72, unknown 16.7
                                  Zona incerta
                                  nTPM: 26.4
                                  2208 Male, age 80, right hemisphere 34.6
                                  2822 Male, age 74, right hemisphere 33.6
                                  2403 Male, age 62, unknown 25.4
                                  2215 Male, age 66, unknown 21.7
                                  2663 Female, age 72, unknown 16.6

                                  THALAMUS - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 11.7
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Thalamus
                                  Scaled Tags Per Million: 11.7
                                  FF:10154-103A1 76 years, female 11.7

                                  THALAMUS - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 16.0
                                  Pig sample Sample description nTPM
                                  13.615.017.513.420.702468101214161820
                                  13.615.017.513.420.702468101214161820
                                  Thalamus
                                  nTPM: 16.0
                                  Samples: 4

                                  Max nTPM: 20.7
                                  Min nTPM: 13.4
                                  Sample A Female 13.6
                                  Sample B Female 16.4
                                  Sample C Male 20.7
                                  Sample D Male 13.4

                                  THALAMUS - Mouse RNA-seqi

                                  RNA-seq data obtained from mouse brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 16.4
                                  Mouse sample Sample description nTPM
                                  14.116.318.513.119.8024681012141618
                                  14.116.318.513.119.8024681012141618
                                  Thalamus
                                  nTPM: 16.4
                                  Samples: 4

                                  Max nTPM: 19.8
                                  Min nTPM: 13.1
                                  Sample A Male 14.4
                                  Sample B Male 19.8
                                  Sample C Female 13.1
                                  Sample D Female 18.1

                                  THALAMUS - Allen Mouse ISHi

                                  In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                  Max Expression energy 4.2
                                  Allen experiment id Experiment description Expression energy
                                  Thalamus
                                  Expression energy: 4.2
                                  75931565 Antisense, RP_060606_01_C02, Mouse strain C57BL/6J (56 days, male) 4.2

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