MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.7 nTPM
HPA Brain:20.1 nTPM
GTEx:2.7 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:6.0 nTPM
Mouse:3.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.3
2019 Male, age 18, unknown 21.8
2666 Male, age 74, left hemisphere 21.7
2411 Female, age 72, unknown 20.4
1827 Male, age 72, unknown 18.7
1833 Male, age 53, unknown 18.7
2828 Female, age 72, unknown 18.1
1830 Male, age 51, unknown 17.6
2586 Male, age 75, left hemisphere 17.5
1870 Female, age 42, unknown 15.9
2219 Male, age 76, both hemispheres 12.3
Dorsal raphe nucleus
nTPM: 16.1
2016 Female, age 72, unknown 18.7
1828 Male, age 53, unknown 18.0
2750 Male, age 76, both hemispheres 17.7
2298 Female, age 72, unknown 13.4
2047 Male, age 72, unknown 13.0
Inferior colliculus
nTPM: 16.8
1890 Male, age 53, unknown 19.7
2097 Female, age 72, unknown 16.8
1848 Female, age 42, unknown 15.6
2849 Male, age 72, unknown 15.3
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Periaquaductal grey, anterior
nTPM: 14.4
2502 Female, age 75, unknown 15.6
1947 Male, age 18, unknown 15.0
1795 Male, age 51, unknown 12.5
Periaquaductal grey, dorsal
nTPM: 16.1
2464 Female, age 72, unknown 17.9
1840 Male, age 53, unknown 17.4
1831 Male, age 72, unknown 16.6
2850 Male, age 76, both hemispheres 12.6
Periaquaductal grey, lateral
nTPM: 14.4
2053 Male, age 18, unknown 16.9
2140 Male, age 76, both hemispheres 14.7
2272 Male, age 74, both hemispheres 11.8
Pretectal area
nTPM: 17.2
2007 Male, age 72, unknown 23.9
1817 Female, age 42, unknown 23.3
1816 Male, age 51, unknown 20.8
1944 Female, age 72, unknown 20.2
1815 Male, age 53, unknown 18.5
2316 Male, age 76, right hemisphere 17.5
2407 Male, age 75, both hemispheres 16.1
2825 Male, age 18, unknown 13.7
2667 Female, age 75, unknown 13.0
2273 Male, age 74, both hemispheres 11.1
2224 Female, age 72, unknown 10.9
Red nucleus
nTPM: 20.1
2588 Male, age 74, left hemisphere 32.4
2503 Female, age 72, unknown 23.9
2584 Male, age 75, left hemisphere 22.2
1821 Female, age 72, unknown 20.6
2785 Male, age 18, unknown 19.9
2823 Male, age 76, right hemisphere 19.9
1904 Male, age 53, unknown 19.4
1954 Female, age 42, unknown 17.3
2725 Female, age 75, unknown 17.1
2769 Male, age 72, unknown 16.7
2227 Male, age 72, unknown 16.5
1865 Male, age 51, unknown 15.3
Substantia nigra
nTPM: 18.6
2409 Female, age 72, unknown 25.4
2583 Male, age 75, right hemisphere 21.1
2241 Male, age 72, unknown 19.4
2665 Male, age 74, both hemispheres 19.1
1851 Male, age 51, unknown 18.7
2590 Female, age 75, unknown 18.3
1889 Female, age 72, unknown 17.9
2699 Male, age 18, unknown 15.4
1916 Female, age 42, unknown 15.1
1941 Male, age 53, unknown 15.1
Superior colliculus
nTPM: 17.1
2668 Female, age 75, unknown 22.7
1995 Male, age 72, unknown 19.3
1913 Female, age 42, unknown 18.9
2587 Male, age 74, left hemisphere 18.2
1839 Male, age 51, unknown 17.4
1895 Male, age 76, right hemisphere 17.2
2261 Male, age 18, unknown 16.0
1796 Male, age 53, unknown 15.4
2087 Female, age 72, unknown 14.1
2664 Male, age 75, both hemispheres 11.5
Ventral tegmental area
nTPM: 15.3
2410 Female, age 72, unknown 18.9
1942 Male, age 51, unknown 17.4
1915 Female, age 42, unknown 17.0
2223 Female, age 72, unknown 14.7
2021 Male, age 53, unknown 12.3
2218 Male, age 76, both hemispheres 11.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.7
Samples: 139

Max nTPM: 6.2
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 3.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 6.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 5.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 4.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 4.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 4.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 4.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 4.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 4.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 4.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 4.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 4.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.9
FF:10158-103A5 76 years, female 19.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.7
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.2
Sample A Female 6.2
Sample B Female 5.4
Sample C Male 5.2
Sample D Male 5.9
Midbrain
nTPM: 5.8
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.6
Sample A Female 5.9
Sample B Female 5.6
Sample C Male 5.8
Sample D Male 6.0
Periaqueductal gray
nTPM: 5.3
Samples: 3

Max nTPM: 5.5
Min nTPM: 5.2
Sample B Female 5.5
Sample C Male 5.3
Sample D Male 5.2
Superior colliculi
nTPM: 6.0
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.6
Sample A Female 6.5
Sample B Female 5.6
Sample C Male 5.9
Sample D Male 6.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.1
Sample A Male 3.1
Sample B Male 3.8
Sample C Female 3.9
Sample D Female 4.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68667527 Antisense, RP_050201_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0

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