MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.9 nTPM
HPA Brain:429.3 nTPM
GTEx:31.9 nTPM
FANTOM5:67.7 Scaled Tags Per Million
Pig:57.6 nTPM
Mouse:88.7 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 429.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 382.2
1830 Male, age 51, unknown 514.5
1833 Male, age 53, unknown 471.9
2411 Female, age 72, unknown 465.4
2666 Male, age 74, left hemisphere 413.5
2019 Male, age 18, unknown 408.3
1870 Female, age 42, unknown 349.3
1827 Male, age 72, unknown 320.5
2828 Female, age 72, unknown 319.9
2219 Male, age 76, both hemispheres 293.0
2586 Male, age 75, left hemisphere 265.9
Dorsal raphe nucleus
nTPM: 290.0
2750 Male, age 76, both hemispheres 456.3
2016 Female, age 72, unknown 304.2
1828 Male, age 53, unknown 278.8
2047 Male, age 72, unknown 239.2
2298 Female, age 72, unknown 171.5
Inferior colliculus
nTPM: 269.9
1890 Male, age 53, unknown 310.4
2849 Male, age 72, unknown 299.5
1848 Female, age 42, unknown 261.1
2097 Female, age 72, unknown 208.7
Median raphe nucleus
nTPM: 329.0
2220 Male, age 76, midline 329.0
Periaquaductal grey, anterior
nTPM: 219.9
1947 Male, age 18, unknown 259.7
1795 Male, age 51, unknown 213.9
2502 Female, age 75, unknown 186.0
Periaquaductal grey, dorsal
nTPM: 290.8
2850 Male, age 76, both hemispheres 350.7
2464 Female, age 72, unknown 335.9
1831 Male, age 72, unknown 271.4
1840 Male, age 53, unknown 205.1
Periaquaductal grey, lateral
nTPM: 298.0
2272 Male, age 74, both hemispheres 340.0
2140 Male, age 76, both hemispheres 295.2
2053 Male, age 18, unknown 258.6
Pretectal area
nTPM: 280.7
2407 Male, age 75, both hemispheres 354.4
2316 Male, age 76, right hemisphere 348.9
2667 Female, age 75, unknown 345.7
1815 Male, age 53, unknown 335.4
2273 Male, age 74, both hemispheres 324.3
2224 Female, age 72, unknown 276.4
2825 Male, age 18, unknown 264.3
1817 Female, age 42, unknown 247.4
1944 Female, age 72, unknown 209.0
2007 Male, age 72, unknown 203.4
1816 Male, age 51, unknown 178.6
Red nucleus
nTPM: 429.3
2823 Male, age 76, right hemisphere 501.7
1865 Male, age 51, unknown 490.1
2503 Female, age 72, unknown 482.9
2785 Male, age 18, unknown 476.3
1904 Male, age 53, unknown 439.0
1954 Female, age 42, unknown 432.6
2227 Male, age 72, unknown 420.4
2588 Male, age 74, left hemisphere 415.0
2769 Male, age 72, unknown 410.8
2725 Female, age 75, unknown 370.4
1821 Female, age 72, unknown 365.2
2584 Male, age 75, left hemisphere 347.1
Substantia nigra
nTPM: 318.4
2409 Female, age 72, unknown 428.0
2583 Male, age 75, right hemisphere 397.2
2590 Female, age 75, unknown 383.3
2699 Male, age 18, unknown 372.8
1851 Male, age 51, unknown 305.4
1941 Male, age 53, unknown 305.2
2241 Male, age 72, unknown 290.2
1889 Female, age 72, unknown 273.4
2665 Male, age 74, both hemispheres 216.2
1916 Female, age 42, unknown 212.7
Superior colliculus
nTPM: 321.0
1995 Male, age 72, unknown 577.2
1913 Female, age 42, unknown 509.6
1895 Male, age 76, right hemisphere 316.4
1839 Male, age 51, unknown 299.8
2587 Male, age 74, left hemisphere 289.9
2087 Female, age 72, unknown 262.6
2668 Female, age 75, unknown 262.4
2664 Male, age 75, both hemispheres 257.6
1796 Male, age 53, unknown 228.1
2261 Male, age 18, unknown 206.0
Ventral tegmental area
nTPM: 314.5
2223 Female, age 72, unknown 362.6
2410 Female, age 72, unknown 340.5
1942 Male, age 51, unknown 317.0
2021 Male, age 53, unknown 312.8
2218 Male, age 76, both hemispheres 305.6
1915 Female, age 42, unknown 248.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.9
Samples: 139

Max nTPM: 48.9
Min nTPM: 20.6
Std nTPM: 5.4
Median nTPM: 30.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 48.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 48.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 47.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 46.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 44.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 43.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 43.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 41.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.7
FF:10158-103A5 76 years, female 67.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.7
Samples: 4

Max nTPM: 61.6
Min nTPM: 42.8
Sample A Female 61.6
Sample B Female 44.7
Sample C Male 49.8
Sample D Male 42.8
Midbrain
nTPM: 57.7
Samples: 4

Max nTPM: 71.3
Min nTPM: 48.4
Sample A Female 48.4
Sample B Female 50.9
Sample C Male 71.3
Sample D Male 60.0
Periaqueductal gray
nTPM: 45.4
Samples: 3

Max nTPM: 47.1
Min nTPM: 44.4
Sample B Female 44.7
Sample C Male 47.1
Sample D Male 44.4
Superior colliculi
nTPM: 57.6
Samples: 4

Max nTPM: 63.5
Min nTPM: 50.9
Sample A Female 62.2
Sample B Female 53.9
Sample C Male 63.5
Sample D Male 50.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.7
Samples: 4

Max nTPM: 92.8
Min nTPM: 83.6
Sample A Male 83.6
Sample B Male 91.4
Sample C Female 92.8
Sample D Female 87.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
413804 Antisense, RP_040809_01_F03, Mouse strain C57BL/6J (56 days, male) 4.8

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