MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.8 nTPM
HPA Brain:12.9 nTPM
GTEx:4.8 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Pig:15.6 nTPM
Mouse:12.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.7
2019 Male, age 18, unknown 14.5
1830 Male, age 51, unknown 12.3
1827 Male, age 72, unknown 11.9
1833 Male, age 53, unknown 11.8
2666 Male, age 74, left hemisphere 11.8
1870 Female, age 42, unknown 11.7
2411 Female, age 72, unknown 11.7
2586 Male, age 75, left hemisphere 11.3
2219 Male, age 76, both hemispheres 10.3
2828 Female, age 72, unknown 10.0
Dorsal raphe nucleus
nTPM: 11.7
2016 Female, age 72, unknown 12.7
2298 Female, age 72, unknown 12.2
1828 Male, age 53, unknown 11.5
2750 Male, age 76, both hemispheres 11.3
2047 Male, age 72, unknown 10.8
Inferior colliculus
nTPM: 11.9
2097 Female, age 72, unknown 12.9
1890 Male, age 53, unknown 12.4
1848 Female, age 42, unknown 11.9
2849 Male, age 72, unknown 10.4
Median raphe nucleus
nTPM: 12.8
2220 Male, age 76, midline 12.8
Periaquaductal grey, anterior
nTPM: 12.4
1947 Male, age 18, unknown 14.4
2502 Female, age 75, unknown 12.3
1795 Male, age 51, unknown 10.4
Periaquaductal grey, dorsal
nTPM: 12.9
2850 Male, age 76, both hemispheres 15.5
1831 Male, age 72, unknown 12.9
2464 Female, age 72, unknown 12.3
1840 Male, age 53, unknown 11.0
Periaquaductal grey, lateral
nTPM: 12.0
2272 Male, age 74, both hemispheres 13.2
2140 Male, age 76, both hemispheres 13.0
2053 Male, age 18, unknown 9.9
Pretectal area
nTPM: 12.9
2007 Male, age 72, unknown 14.8
1816 Male, age 51, unknown 14.1
1944 Female, age 72, unknown 14.1
1817 Female, age 42, unknown 13.8
1815 Male, age 53, unknown 13.7
2273 Male, age 74, both hemispheres 13.6
2224 Female, age 72, unknown 12.7
2667 Female, age 75, unknown 12.5
2825 Male, age 18, unknown 11.2
2316 Male, age 76, right hemisphere 11.1
2407 Male, age 75, both hemispheres 10.1
Red nucleus
nTPM: 12.4
1954 Female, age 42, unknown 13.7
1904 Male, age 53, unknown 13.5
1821 Female, age 72, unknown 13.2
1865 Male, age 51, unknown 13.1
2785 Male, age 18, unknown 13.1
2503 Female, age 72, unknown 13.0
2769 Male, age 72, unknown 12.0
2823 Male, age 76, right hemisphere 12.0
2725 Female, age 75, unknown 11.9
2227 Male, age 72, unknown 11.7
2584 Male, age 75, left hemisphere 11.7
2588 Male, age 74, left hemisphere 10.4
Substantia nigra
nTPM: 11.5
1889 Female, age 72, unknown 13.3
2241 Male, age 72, unknown 12.6
2590 Female, age 75, unknown 12.2
1941 Male, age 53, unknown 12.0
2409 Female, age 72, unknown 11.3
2583 Male, age 75, right hemisphere 11.3
2665 Male, age 74, both hemispheres 11.3
1851 Male, age 51, unknown 10.6
2699 Male, age 18, unknown 10.3
1916 Female, age 42, unknown 10.0
Superior colliculus
nTPM: 11.9
2087 Female, age 72, unknown 13.0
1995 Male, age 72, unknown 12.4
1913 Female, age 42, unknown 12.2
1839 Male, age 51, unknown 12.1
2587 Male, age 74, left hemisphere 12.1
2261 Male, age 18, unknown 11.8
2668 Female, age 75, unknown 11.8
1895 Male, age 76, right hemisphere 11.3
2664 Male, age 75, both hemispheres 11.2
1796 Male, age 53, unknown 10.8
Ventral tegmental area
nTPM: 10.9
2410 Female, age 72, unknown 11.5
1942 Male, age 51, unknown 11.2
2021 Male, age 53, unknown 11.0
2218 Male, age 76, both hemispheres 10.8
2223 Female, age 72, unknown 10.8
1915 Female, age 42, unknown 10.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.8
Samples: 139

Max nTPM: 7.0
Min nTPM: 2.3
Std nTPM: 0.8
Median nTPM: 4.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 7.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 6.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 6.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 6.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 6.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 6.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 6.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 6.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 6.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 6.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 6.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.3
FF:10158-103A5 76 years, female 42.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.4
Samples: 4

Max nTPM: 16.2
Min nTPM: 14.2
Sample A Female 15.5
Sample B Female 14.2
Sample C Male 16.2
Sample D Male 15.5
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 17.1
Min nTPM: 13.8
Sample A Female 17.1
Sample B Female 16.4
Sample C Male 13.8
Sample D Male 14.9
Periaqueductal gray
nTPM: 14.3
Samples: 3

Max nTPM: 15.4
Min nTPM: 13.4
Sample B Female 14.0
Sample C Male 13.4
Sample D Male 15.4
Superior colliculi
nTPM: 14.3
Samples: 4

Max nTPM: 15.1
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 13.8
Sample C Male 15.1
Sample D Male 14.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.6
Samples: 4

Max nTPM: 13.7
Min nTPM: 11.3
Sample A Male 12.4
Sample B Male 13.0
Sample C Female 13.7
Sample D Female 11.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70295924 Antisense, RP_050531_04_C12, Mouse strain C57BL/6J (56 days, male) 0.5

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