MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.5 nTPM
HPA Brain:119.4 nTPM
GTEx:10.5 nTPM
FANTOM5:102.9 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:49.8 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 119.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.8
2586 Male, age 75, left hemisphere 200.5
2828 Female, age 72, unknown 144.1
2666 Male, age 74, left hemisphere 100.2
1870 Female, age 42, unknown 97.9
1833 Male, age 53, unknown 94.2
1827 Male, age 72, unknown 90.0
2411 Female, age 72, unknown 88.1
1830 Male, age 51, unknown 84.5
2019 Male, age 18, unknown 74.8
2219 Male, age 76, both hemispheres 54.3
Dorsal raphe nucleus
nTPM: 96.1
2016 Female, age 72, unknown 107.7
2047 Male, age 72, unknown 103.4
2298 Female, age 72, unknown 94.5
1828 Male, age 53, unknown 93.6
2750 Male, age 76, both hemispheres 81.4
Inferior colliculus
nTPM: 92.5
1848 Female, age 42, unknown 118.6
2097 Female, age 72, unknown 86.0
1890 Male, age 53, unknown 84.7
2849 Male, age 72, unknown 80.6
Median raphe nucleus
nTPM: 80.9
2220 Male, age 76, midline 80.9
Periaquaductal grey, anterior
nTPM: 97.9
1795 Male, age 51, unknown 112.6
1947 Male, age 18, unknown 104.5
2502 Female, age 75, unknown 76.7
Periaquaductal grey, dorsal
nTPM: 88.1
2464 Female, age 72, unknown 103.9
1831 Male, age 72, unknown 87.7
2850 Male, age 76, both hemispheres 82.7
1840 Male, age 53, unknown 78.0
Periaquaductal grey, lateral
nTPM: 96.0
2053 Male, age 18, unknown 116.7
2140 Male, age 76, both hemispheres 93.8
2272 Male, age 74, both hemispheres 77.5
Pretectal area
nTPM: 97.3
1817 Female, age 42, unknown 119.9
2825 Male, age 18, unknown 108.5
1944 Female, age 72, unknown 107.1
2224 Female, age 72, unknown 104.1
2316 Male, age 76, right hemisphere 98.6
1816 Male, age 51, unknown 97.6
1815 Male, age 53, unknown 97.3
2667 Female, age 75, unknown 96.9
2007 Male, age 72, unknown 85.0
2273 Male, age 74, both hemispheres 82.8
2407 Male, age 75, both hemispheres 72.4
Red nucleus
nTPM: 119.4
1954 Female, age 42, unknown 158.2
2503 Female, age 72, unknown 147.6
1904 Male, age 53, unknown 134.8
2769 Male, age 72, unknown 125.5
2227 Male, age 72, unknown 123.3
2725 Female, age 75, unknown 121.9
1821 Female, age 72, unknown 121.4
2588 Male, age 74, left hemisphere 121.4
1865 Male, age 51, unknown 114.2
2823 Male, age 76, right hemisphere 99.7
2584 Male, age 75, left hemisphere 83.7
2785 Male, age 18, unknown 80.7
Substantia nigra
nTPM: 83.3
1889 Female, age 72, unknown 98.0
2699 Male, age 18, unknown 96.2
2583 Male, age 75, right hemisphere 93.4
1851 Male, age 51, unknown 89.6
1916 Female, age 42, unknown 87.1
2409 Female, age 72, unknown 84.4
2590 Female, age 75, unknown 78.4
2241 Male, age 72, unknown 75.4
1941 Male, age 53, unknown 69.1
2665 Male, age 74, both hemispheres 61.7
Superior colliculus
nTPM: 94.6
2668 Female, age 75, unknown 118.4
1995 Male, age 72, unknown 116.0
1796 Male, age 53, unknown 110.3
2261 Male, age 18, unknown 100.4
2087 Female, age 72, unknown 94.6
1913 Female, age 42, unknown 93.0
2664 Male, age 75, both hemispheres 87.3
1839 Male, age 51, unknown 79.0
1895 Male, age 76, right hemisphere 74.3
2587 Male, age 74, left hemisphere 73.0
Ventral tegmental area
nTPM: 85.3
2410 Female, age 72, unknown 95.2
2021 Male, age 53, unknown 93.7
1942 Male, age 51, unknown 91.9
1915 Female, age 42, unknown 90.8
2218 Male, age 76, both hemispheres 73.9
2223 Female, age 72, unknown 66.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.5
Samples: 139

Max nTPM: 57.5
Min nTPM: 0.3
Std nTPM: 9.2
Median nTPM: 7.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 57.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 50.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 44.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 38.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 33.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 28.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 26.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 26.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 25.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 24.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.9
FF:10158-103A5 76 years, female 102.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.1
Samples: 4

Max nTPM: 48.2
Min nTPM: 33.1
Sample A Female 36.2
Sample B Female 33.1
Sample C Male 34.7
Sample D Male 48.2
Midbrain
nTPM: 40.8
Samples: 4

Max nTPM: 67.3
Min nTPM: 23.8
Sample A Female 67.3
Sample B Female 31.9
Sample C Male 40.3
Sample D Male 23.8
Periaqueductal gray
nTPM: 32.8
Samples: 3

Max nTPM: 35.3
Min nTPM: 29.2
Sample B Female 33.9
Sample C Male 29.2
Sample D Male 35.3
Superior colliculi
nTPM: 35.4
Samples: 4

Max nTPM: 38.3
Min nTPM: 32.7
Sample A Female 33.2
Sample B Female 32.7
Sample C Male 38.3
Sample D Male 37.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.8
Samples: 4

Max nTPM: 51.8
Min nTPM: 47.9
Sample A Male 50.1
Sample B Male 49.2
Sample C Female 47.9
Sample D Female 51.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
1372 Antisense, RP_Baylor_102861, Mouse strain C57BL/6J (56 days, male) 1.1
1371 Antisense, RP_Baylor_102861, Mouse strain C57BL/6J (56 days, male) 0.8

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