MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.9 nTPM
HPA Brain:65.3 nTPM
GTEx:42.9 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:22.0 nTPM
Mouse:50.1 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.0
2828 Female, age 72, unknown 73.2
2586 Male, age 75, left hemisphere 64.8
1827 Male, age 72, unknown 55.5
1833 Male, age 53, unknown 47.0
2411 Female, age 72, unknown 45.1
1830 Male, age 51, unknown 43.9
2019 Male, age 18, unknown 43.0
1870 Female, age 42, unknown 40.0
2666 Male, age 74, left hemisphere 34.6
2219 Male, age 76, both hemispheres 32.9
Dorsal raphe nucleus
nTPM: 59.9
1828 Male, age 53, unknown 66.6
2016 Female, age 72, unknown 66.3
2047 Male, age 72, unknown 61.3
2298 Female, age 72, unknown 57.2
2750 Male, age 76, both hemispheres 48.3
Inferior colliculus
nTPM: 56.6
1848 Female, age 42, unknown 57.6
2097 Female, age 72, unknown 57.6
2849 Male, age 72, unknown 56.5
1890 Male, age 53, unknown 54.6
Median raphe nucleus
nTPM: 47.0
2220 Male, age 76, midline 47.0
Periaquaductal grey, anterior
nTPM: 51.2
2502 Female, age 75, unknown 54.5
1947 Male, age 18, unknown 53.7
1795 Male, age 51, unknown 45.4
Periaquaductal grey, dorsal
nTPM: 58.5
2850 Male, age 76, both hemispheres 78.2
1840 Male, age 53, unknown 57.3
2464 Female, age 72, unknown 55.3
1831 Male, age 72, unknown 43.0
Periaquaductal grey, lateral
nTPM: 60.9
2140 Male, age 76, both hemispheres 79.9
2053 Male, age 18, unknown 55.0
2272 Male, age 74, both hemispheres 47.9
Pretectal area
nTPM: 56.0
2316 Male, age 76, right hemisphere 68.1
2273 Male, age 74, both hemispheres 67.9
1816 Male, age 51, unknown 61.8
2667 Female, age 75, unknown 60.6
1817 Female, age 42, unknown 56.9
2825 Male, age 18, unknown 56.7
1815 Male, age 53, unknown 55.5
1944 Female, age 72, unknown 51.7
2224 Female, age 72, unknown 46.9
2007 Male, age 72, unknown 45.5
2407 Male, age 75, both hemispheres 44.3
Red nucleus
nTPM: 65.3
1821 Female, age 72, unknown 76.2
2725 Female, age 75, unknown 73.9
2503 Female, age 72, unknown 73.5
2823 Male, age 76, right hemisphere 72.7
2769 Male, age 72, unknown 71.6
1865 Male, age 51, unknown 71.1
2227 Male, age 72, unknown 70.4
1954 Female, age 42, unknown 68.1
2588 Male, age 74, left hemisphere 63.2
1904 Male, age 53, unknown 61.6
2785 Male, age 18, unknown 43.6
2584 Male, age 75, left hemisphere 38.2
Substantia nigra
nTPM: 62.4
2699 Male, age 18, unknown 92.2
2409 Female, age 72, unknown 74.5
1916 Female, age 42, unknown 69.4
1851 Male, age 51, unknown 66.7
1889 Female, age 72, unknown 61.7
2590 Female, age 75, unknown 58.4
2583 Male, age 75, right hemisphere 54.4
2665 Male, age 74, both hemispheres 51.9
2241 Male, age 72, unknown 51.0
1941 Male, age 53, unknown 44.2
Superior colliculus
nTPM: 55.6
1796 Male, age 53, unknown 71.5
1995 Male, age 72, unknown 70.8
2261 Male, age 18, unknown 58.0
1895 Male, age 76, right hemisphere 56.9
2664 Male, age 75, both hemispheres 56.0
2087 Female, age 72, unknown 53.8
1913 Female, age 42, unknown 51.9
1839 Male, age 51, unknown 51.2
2587 Male, age 74, left hemisphere 43.4
2668 Female, age 75, unknown 42.5
Ventral tegmental area
nTPM: 52.7
1915 Female, age 42, unknown 60.2
2410 Female, age 72, unknown 53.4
2021 Male, age 53, unknown 53.0
2223 Female, age 72, unknown 50.7
1942 Male, age 51, unknown 49.7
2218 Male, age 76, both hemispheres 49.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.9
Samples: 139

Max nTPM: 183.9
Min nTPM: 3.9
Std nTPM: 30.2
Median nTPM: 35.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 183.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 175.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 153.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 135.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 131.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 106.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 104.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 101.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 97.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 92.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 90.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 22.4
Min nTPM: 16.6
Sample A Female 22.4
Sample B Female 16.6
Sample C Male 19.8
Sample D Male 16.8
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 30.8
Min nTPM: 13.9
Sample A Female 19.3
Sample B Female 30.8
Sample C Male 23.9
Sample D Male 13.9
Periaqueductal gray
nTPM: 21.5
Samples: 3

Max nTPM: 28.8
Min nTPM: 13.6
Sample B Female 28.8
Sample C Male 22.0
Sample D Male 13.6
Superior colliculi
nTPM: 19.7
Samples: 4

Max nTPM: 22.3
Min nTPM: 17.5
Sample A Female 22.3
Sample B Female 18.1
Sample C Male 20.9
Sample D Male 17.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.1
Samples: 4

Max nTPM: 53.1
Min nTPM: 45.8
Sample A Male 50.7
Sample B Male 45.8
Sample C Female 50.9
Sample D Female 53.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
1725 Antisense, RP_040604_01_B01, Mouse strain C57BL/6J (56 days, male) 3.9
1724 Antisense, RP_040604_01_B01, Mouse strain C57BL/6J (56 days, male) 2.3

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