MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:29.8 nTPM
GTEx:9.5 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:10.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.7
2828 Female, age 72, unknown 24.3
2586 Male, age 75, left hemisphere 24.0
1870 Female, age 42, unknown 22.4
1827 Male, age 72, unknown 20.7
1833 Male, age 53, unknown 20.4
1830 Male, age 51, unknown 19.6
2411 Female, age 72, unknown 18.7
2666 Male, age 74, left hemisphere 18.5
2019 Male, age 18, unknown 16.3
2219 Male, age 76, both hemispheres 11.6
Dorsal raphe nucleus
nTPM: 24.9
2016 Female, age 72, unknown 30.4
2298 Female, age 72, unknown 25.5
2047 Male, age 72, unknown 25.4
1828 Male, age 53, unknown 23.2
2750 Male, age 76, both hemispheres 20.1
Inferior colliculus
nTPM: 19.6
2849 Male, age 72, unknown 21.0
1848 Female, age 42, unknown 19.8
2097 Female, age 72, unknown 19.0
1890 Male, age 53, unknown 18.5
Median raphe nucleus
nTPM: 22.6
2220 Male, age 76, midline 22.6
Periaquaductal grey, anterior
nTPM: 23.3
1795 Male, age 51, unknown 24.4
1947 Male, age 18, unknown 24.2
2502 Female, age 75, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 29.2
2850 Male, age 76, both hemispheres 39.6
1840 Male, age 53, unknown 29.5
1831 Male, age 72, unknown 24.5
2464 Female, age 72, unknown 23.1
Periaquaductal grey, lateral
nTPM: 29.8
2140 Male, age 76, both hemispheres 41.0
2053 Male, age 18, unknown 25.7
2272 Male, age 74, both hemispheres 22.8
Pretectal area
nTPM: 22.4
2667 Female, age 75, unknown 27.9
2316 Male, age 76, right hemisphere 26.7
2224 Female, age 72, unknown 26.5
2273 Male, age 74, both hemispheres 24.6
2825 Male, age 18, unknown 24.0
1944 Female, age 72, unknown 21.8
1815 Male, age 53, unknown 20.6
1817 Female, age 42, unknown 19.4
1816 Male, age 51, unknown 19.2
2407 Male, age 75, both hemispheres 18.3
2007 Male, age 72, unknown 17.0
Red nucleus
nTPM: 19.8
2725 Female, age 75, unknown 24.2
2503 Female, age 72, unknown 22.4
1821 Female, age 72, unknown 20.6
1865 Male, age 51, unknown 20.2
2823 Male, age 76, right hemisphere 20.1
1904 Male, age 53, unknown 19.8
1954 Female, age 42, unknown 19.5
2227 Male, age 72, unknown 19.5
2769 Male, age 72, unknown 19.5
2584 Male, age 75, left hemisphere 18.5
2785 Male, age 18, unknown 17.0
2588 Male, age 74, left hemisphere 15.9
Substantia nigra
nTPM: 26.7
2699 Male, age 18, unknown 38.0
2409 Female, age 72, unknown 31.3
1851 Male, age 51, unknown 29.4
2241 Male, age 72, unknown 27.6
1916 Female, age 42, unknown 27.3
2590 Female, age 75, unknown 25.3
2665 Male, age 74, both hemispheres 23.4
2583 Male, age 75, right hemisphere 22.3
1889 Female, age 72, unknown 21.0
1941 Male, age 53, unknown 21.0
Superior colliculus
nTPM: 20.7
1995 Male, age 72, unknown 25.3
1913 Female, age 42, unknown 24.6
1796 Male, age 53, unknown 24.1
2664 Male, age 75, both hemispheres 23.5
2087 Female, age 72, unknown 21.4
2261 Male, age 18, unknown 19.1
1839 Male, age 51, unknown 19.0
2587 Male, age 74, left hemisphere 18.1
1895 Male, age 76, right hemisphere 17.2
2668 Female, age 75, unknown 14.9
Ventral tegmental area
nTPM: 23.4
2021 Male, age 53, unknown 27.0
1915 Female, age 42, unknown 26.4
2218 Male, age 76, both hemispheres 23.9
1942 Male, age 51, unknown 23.2
2410 Female, age 72, unknown 21.8
2223 Female, age 72, unknown 18.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 23.9
Min nTPM: 3.0
Std nTPM: 4.5
Median nTPM: 8.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 23.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 23.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 22.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 21.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 20.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 19.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 19.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 19.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 17.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 17.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 17.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.3
Sample A Female 12.4
Sample B Female 13.9
Sample C Male 11.8
Sample D Male 11.3
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 14.1
Min nTPM: 10.0
Sample A Female 11.2
Sample B Female 14.1
Sample C Male 11.9
Sample D Male 10.0
Periaqueductal gray
nTPM: 13.7
Samples: 3

Max nTPM: 15.0
Min nTPM: 11.5
Sample B Female 15.0
Sample C Male 14.6
Sample D Male 11.5
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.1
Sample A Female 10.6
Sample B Female 9.1
Sample C Male 11.8
Sample D Male 9.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.7
Sample A Male 10.1
Sample B Male 10.5
Sample C Female 9.7
Sample D Female 10.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
76135504 Antisense, RP_060518_04_F06, Mouse strain C57BL/6J (56 days, male) 0.7

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