MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.0 nTPM
HPA Brain:59.5 nTPM
GTEx:79.0 nTPM
FANTOM5:162.6 Scaled Tags Per Million
Pig:51.9 nTPM
Mouse:28.4 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.6
2411 Female, age 72, unknown 60.1
1870 Female, age 42, unknown 57.3
2019 Male, age 18, unknown 56.3
1833 Male, age 53, unknown 52.4
1830 Male, age 51, unknown 51.6
2666 Male, age 74, left hemisphere 46.3
1827 Male, age 72, unknown 44.7
2219 Male, age 76, both hemispheres 43.4
2586 Male, age 75, left hemisphere 41.8
2828 Female, age 72, unknown 41.7
Dorsal raphe nucleus
nTPM: 46.4
2750 Male, age 76, both hemispheres 59.7
2298 Female, age 72, unknown 45.7
1828 Male, age 53, unknown 42.5
2047 Male, age 72, unknown 42.2
2016 Female, age 72, unknown 42.0
Inferior colliculus
nTPM: 43.4
2097 Female, age 72, unknown 48.5
1890 Male, age 53, unknown 44.8
1848 Female, age 42, unknown 44.0
2849 Male, age 72, unknown 36.4
Median raphe nucleus
nTPM: 53.1
2220 Male, age 76, midline 53.1
Periaquaductal grey, anterior
nTPM: 42.9
2502 Female, age 75, unknown 51.2
1947 Male, age 18, unknown 40.0
1795 Male, age 51, unknown 37.4
Periaquaductal grey, dorsal
nTPM: 37.7
2464 Female, age 72, unknown 42.5
1831 Male, age 72, unknown 38.9
2850 Male, age 76, both hemispheres 34.9
1840 Male, age 53, unknown 34.4
Periaquaductal grey, lateral
nTPM: 36.5
2053 Male, age 18, unknown 39.6
2272 Male, age 74, both hemispheres 36.9
2140 Male, age 76, both hemispheres 33.0
Pretectal area
nTPM: 47.6
2007 Male, age 72, unknown 57.2
1815 Male, age 53, unknown 54.7
1944 Female, age 72, unknown 54.2
1817 Female, age 42, unknown 53.3
1816 Male, age 51, unknown 52.3
2316 Male, age 76, right hemisphere 44.6
2224 Female, age 72, unknown 42.8
2273 Male, age 74, both hemispheres 42.4
2667 Female, age 75, unknown 42.2
2825 Male, age 18, unknown 41.3
2407 Male, age 75, both hemispheres 38.7
Red nucleus
nTPM: 59.5
1821 Female, age 72, unknown 69.9
1904 Male, age 53, unknown 67.5
1865 Male, age 51, unknown 65.0
2503 Female, age 72, unknown 64.8
1954 Female, age 42, unknown 60.3
2769 Male, age 72, unknown 57.7
2227 Male, age 72, unknown 57.6
2785 Male, age 18, unknown 57.5
2823 Male, age 76, right hemisphere 56.4
2725 Female, age 75, unknown 55.6
2588 Male, age 74, left hemisphere 53.7
2584 Male, age 75, left hemisphere 47.6
Substantia nigra
nTPM: 49.6
1889 Female, age 72, unknown 57.4
2241 Male, age 72, unknown 54.7
2409 Female, age 72, unknown 54.0
1851 Male, age 51, unknown 51.6
1916 Female, age 42, unknown 51.5
1941 Male, age 53, unknown 47.0
2590 Female, age 75, unknown 46.7
2583 Male, age 75, right hemisphere 46.5
2699 Male, age 18, unknown 45.7
2665 Male, age 74, both hemispheres 41.2
Superior colliculus
nTPM: 46.9
1913 Female, age 42, unknown 54.1
2261 Male, age 18, unknown 50.4
1995 Male, age 72, unknown 50.2
2587 Male, age 74, left hemisphere 50.2
2087 Female, age 72, unknown 50.1
2668 Female, age 75, unknown 48.7
1796 Male, age 53, unknown 44.8
1895 Male, age 76, right hemisphere 44.3
1839 Male, age 51, unknown 42.7
2664 Male, age 75, both hemispheres 33.8
Ventral tegmental area
nTPM: 51.0
2223 Female, age 72, unknown 60.8
2410 Female, age 72, unknown 58.8
2218 Male, age 76, both hemispheres 48.5
1942 Male, age 51, unknown 47.0
1915 Female, age 42, unknown 46.6
2021 Male, age 53, unknown 44.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.0
Samples: 139

Max nTPM: 158.8
Min nTPM: 26.0
Std nTPM: 21.2
Median nTPM: 78.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 158.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 143.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 134.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 123.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 120.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 117.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 115.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 112.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 112.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 111.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 109.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 162.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.6
FF:10158-103A5 76 years, female 162.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.7
Samples: 4

Max nTPM: 58.7
Min nTPM: 33.7
Sample A Female 52.6
Sample B Female 33.7
Sample C Male 37.8
Sample D Male 58.7
Midbrain
nTPM: 52.0
Samples: 4

Max nTPM: 89.9
Min nTPM: 34.8
Sample A Female 89.9
Sample B Female 46.4
Sample C Male 34.8
Sample D Male 36.7
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 41.8
Min nTPM: 31.6
Sample B Female 41.8
Sample C Male 31.6
Sample D Male 34.1
Superior colliculi
nTPM: 41.8
Samples: 4

Max nTPM: 50.6
Min nTPM: 30.7
Sample A Female 50.6
Sample B Female 30.7
Sample C Male 39.9
Sample D Male 46.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 29.3
Min nTPM: 25.8
Sample A Male 29.0
Sample B Male 29.3
Sample C Female 25.8
Sample D Female 29.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
545107 Antisense, RP_040825_02_D08, Mouse strain C57BL/6J (56 days, male) 0.4

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