MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1314.8 nTPM
HPA Brain:356.6 nTPM
GTEx:1314.8 nTPM
FANTOM5:22.6 Scaled Tags Per Million
Pig:510.3 nTPM
Mouse:785.1 nTPM
Allen mouse:15.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 356.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 302.9
2666 Male, age 74, left hemisphere 345.5
2411 Female, age 72, unknown 335.3
1870 Female, age 42, unknown 329.4
1827 Male, age 72, unknown 306.2
2828 Female, age 72, unknown 300.3
1830 Male, age 51, unknown 294.9
2586 Male, age 75, left hemisphere 283.3
2219 Male, age 76, both hemispheres 282.5
1833 Male, age 53, unknown 278.0
2019 Male, age 18, unknown 273.6
Dorsal raphe nucleus
nTPM: 324.2
2298 Female, age 72, unknown 409.3
2016 Female, age 72, unknown 360.0
2750 Male, age 76, both hemispheres 303.3
1828 Male, age 53, unknown 292.3
2047 Male, age 72, unknown 256.0
Inferior colliculus
nTPM: 320.8
1890 Male, age 53, unknown 346.4
2097 Female, age 72, unknown 342.1
2849 Male, age 72, unknown 299.3
1848 Female, age 42, unknown 295.4
Median raphe nucleus
nTPM: 289.8
2220 Male, age 76, midline 289.8
Periaquaductal grey, anterior
nTPM: 334.9
2502 Female, age 75, unknown 397.8
1947 Male, age 18, unknown 315.3
1795 Male, age 51, unknown 291.8
Periaquaductal grey, dorsal
nTPM: 322.8
1840 Male, age 53, unknown 388.6
2464 Female, age 72, unknown 314.8
1831 Male, age 72, unknown 303.2
2850 Male, age 76, both hemispheres 284.7
Periaquaductal grey, lateral
nTPM: 294.8
2140 Male, age 76, both hemispheres 307.1
2053 Male, age 18, unknown 304.7
2272 Male, age 74, both hemispheres 272.6
Pretectal area
nTPM: 294.2
2224 Female, age 72, unknown 343.4
2316 Male, age 76, right hemisphere 336.2
2825 Male, age 18, unknown 327.8
2273 Male, age 74, both hemispheres 308.6
1815 Male, age 53, unknown 301.6
2007 Male, age 72, unknown 285.0
1816 Male, age 51, unknown 283.0
1817 Female, age 42, unknown 275.8
1944 Female, age 72, unknown 263.1
2667 Female, age 75, unknown 258.4
2407 Male, age 75, both hemispheres 253.4
Red nucleus
nTPM: 329.5
2503 Female, age 72, unknown 429.2
1865 Male, age 51, unknown 362.6
1821 Female, age 72, unknown 352.2
2725 Female, age 75, unknown 345.9
1904 Male, age 53, unknown 335.5
2227 Male, age 72, unknown 330.3
2769 Male, age 72, unknown 317.4
2588 Male, age 74, left hemisphere 317.1
1954 Female, age 42, unknown 308.8
2584 Male, age 75, left hemisphere 303.5
2785 Male, age 18, unknown 291.9
2823 Male, age 76, right hemisphere 259.1
Substantia nigra
nTPM: 356.6
2241 Male, age 72, unknown 477.3
1851 Male, age 51, unknown 417.4
2665 Male, age 74, both hemispheres 399.2
2699 Male, age 18, unknown 392.1
2409 Female, age 72, unknown 364.9
1916 Female, age 42, unknown 353.1
2590 Female, age 75, unknown 327.7
1889 Female, age 72, unknown 290.4
1941 Male, age 53, unknown 285.9
2583 Male, age 75, right hemisphere 258.3
Superior colliculus
nTPM: 314.4
2587 Male, age 74, left hemisphere 370.5
1913 Female, age 42, unknown 348.8
1995 Male, age 72, unknown 335.6
1796 Male, age 53, unknown 322.5
2261 Male, age 18, unknown 314.6
2668 Female, age 75, unknown 299.6
1839 Male, age 51, unknown 299.4
1895 Male, age 76, right hemisphere 286.2
2664 Male, age 75, both hemispheres 286.2
2087 Female, age 72, unknown 280.1
Ventral tegmental area
nTPM: 342.2
1915 Female, age 42, unknown 388.7
2223 Female, age 72, unknown 364.7
2021 Male, age 53, unknown 347.7
2410 Female, age 72, unknown 340.8
1942 Male, age 51, unknown 325.4
2218 Male, age 76, both hemispheres 286.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1314.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1314.8
Samples: 139

Max nTPM: 3982.2
Min nTPM: 507.7
Std nTPM: 542.6
Median nTPM: 1197.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3982.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3485.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3248.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2781.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2705.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2394.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2354.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2278.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2162.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2114.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2107.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.6
FF:10158-103A5 76 years, female 22.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 510.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 477.9
Samples: 4

Max nTPM: 632.4
Min nTPM: 360.8
Sample A Female 632.4
Sample B Female 542.3
Sample C Male 375.9
Sample D Male 360.8
Midbrain
nTPM: 457.2
Samples: 4

Max nTPM: 584.0
Min nTPM: 361.6
Sample A Female 584.0
Sample B Female 511.3
Sample C Male 372.0
Sample D Male 361.6
Periaqueductal gray
nTPM: 404.1
Samples: 3

Max nTPM: 422.0
Min nTPM: 378.0
Sample B Female 412.3
Sample C Male 422.0
Sample D Male 378.0
Superior colliculi
nTPM: 510.3
Samples: 4

Max nTPM: 601.0
Min nTPM: 408.4
Sample A Female 579.1
Sample B Female 601.0
Sample C Male 452.8
Sample D Male 408.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 785.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 785.1
Samples: 4

Max nTPM: 840.0
Min nTPM: 736.3
Sample A Male 840.0
Sample B Male 792.7
Sample C Female 736.3
Sample D Female 771.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.2
68191186 Antisense, RP_041122_02_H09, Mouse strain C57BL/6J (56 days, male) 15.2

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