HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:17.3 nTPM
HPA Brain:43.0 nTPM
GTEx:17.3 nTPM
FANTOM5:75.7 Scaled Tags Per Million
Pig:53.2 nTPM
Mouse:91.2 nTPM
Allen mouse:3.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody CAB020834
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 43.0
Sample id Sample description nTPM
Hippocampus
nTPM: 26.9
1911 Female, age 85, right hemisphere 31.3
1898 Male, age 80, left hemisphere 29.0
2148 Female, age 91, left hemisphere 27.4
2621 Female, age 67, right hemisphere 27.3
2529 Female, age 94, left hemisphere 26.9
1855 Male, age 76, left hemisphere 19.4
Dentate gyrus
nTPM: 26.4
2528 Male, age 74, both hemispheres 32.6
2246 Female, age 85, both hemispheres 31.5
1927 Female, age 91, both hemispheres 25.7
2010 Male, age 76, both hemispheres 23.0
2531 Female, age 67, both hemispheres 22.9
2530 Female, age 94, left hemisphere 22.4
Entorhinal gyrus
nTPM: 37.2
1938 Female, age 85, left hemisphere 47.6
2764 Male, age 80, right hemisphere 41.9
1787 Male, age 76, left hemisphere 38.8
2613 Female, age 94, left hemisphere 37.1
2117 Female, age 91, right hemisphere 29.5
2686 Male, age 75, right hemisphere 28.4
Hippocampus, CA1
nTPM: 27.2
2082 Female, age 91, right hemisphere 30.6
2527 Male, age 74, both hemispheres 29.2
2749 Male, age 80, left hemisphere 26.4
1873 Female, age 85, both hemispheres 25.2
2045 Male, age 76, both hemispheres 24.6
Hippocampus, CA2
nTPM: 30.5
1940 Female, age 85, left hemisphere 37.0
2249 Male, age 74, both hemispheres 34.7
2113 Female, age 91, right hemisphere 31.3
1892 Male, age 76, both hemispheres 30.4
2437 Female, age 94, left hemisphere 27.8
1963 Male, age 80, left hemisphere 21.5
Hippocampus, CA3
nTPM: 30.1
2436 Male, age 74, both hemispheres 38.9
1891 Female, age 85, both hemispheres 37.3
2137 Male, age 80, left hemisphere 34.0
1867 Male, age 76, both hemispheres 32.3
2620 Female, age 94, left hemisphere 22.0
2861 Female, age 67, both hemispheres 16.3
Parahippocampal cortex
nTPM: 34.2
1850 Male, age 80, both hemispheres 47.3
1990 Female, age 91, right hemisphere 39.9
1933 Female, age 85, both hemispheres 36.0
2250 Female, age 67, right hemisphere 34.4
2532 Female, age 72, left hemisphere 34.0
2018 Male, age 76, both hemispheres 33.1
2693 Female, age 94, both hemispheres 31.2
2245 Female, age 91, both hemispheres 29.4
2692 Male, age 74, both hemispheres 28.8
2622 Female, age 67, right hemisphere 27.4
Perirhinal gyrus
nTPM: 43.0
1841 Female, age 85, right hemisphere 48.1
1794 Male, age 80, right hemisphere 45.4
1847 Female, age 91, left hemisphere 43.8
2848 Male, age 76, right hemisphere 43.5
2521 Female, age 94, right hemisphere 34.1
Subiculum
nTPM: 33.0
1977 Female, age 85, both hemispheres 40.3
2438 Female, age 94, left hemisphere 37.2
1901 Male, age 80, both hemispheres 36.4
2619 Male, age 74, both hemispheres 30.4
2729 Female, age 91, right hemisphere 28.3
2042 Male, age 76, both hemispheres 25.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.3
Samples: 197

Max nTPM: 37.4
Min nTPM: 6.0
Std nTPM: 4.9
Median nTPM: 16.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 37.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 33.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 33.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 32.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 32.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 30.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 30.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 29.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 27.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 27.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 26.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 75.8
FF:10153-102I9 76 years, female 90.3
FF:10169-103B7 60 years, female 61.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 53.2
Pig sample Sample description nTPM
Subiculum
nTPM: 53.2
Samples: 4

Max nTPM: 60.6
Min nTPM: 46.8
Sample A Female 60.6
Sample B Female 55.8
Sample C Male 46.8
Sample D Male 49.7
Dorsal hippocampus
nTPM: 45.3
Samples: 4

Max nTPM: 54.0
Min nTPM: 36.3
Sample A Female 49.1
Sample B Female 41.9
Sample C Male 54.0
Sample D Male 36.3
Entorhinal cortex
nTPM: 51.1
Samples: 4

Max nTPM: 56.4
Min nTPM: 44.8
Sample A Female 53.4
Sample B Female 44.8
Sample C Male 56.4
Sample D Male 49.6
Ventral hippocampus
nTPM: 48.6
Samples: 4

Max nTPM: 57.6
Min nTPM: 42.5
Sample A Female 57.6
Sample B Female 44.5
Sample C Male 49.8
Sample D Male 42.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 91.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 91.2
Samples: 4

Max nTPM: 104.5
Min nTPM: 83.4
Sample A Male 83.4
Sample B Male 86.3
Sample C Female 90.6
Sample D Female 104.5
Hippocampal formation
nTPM: 64.0
Samples: 4

Max nTPM: 76.8
Min nTPM: 52.6
Sample A Male 76.8
Sample B Male 61.7
Sample C Female 52.6
Sample D Female 64.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
631701 Antisense, RP_040907_01_A01, Mouse strain C57BL/6J (56 days, male) 3.5
70928385 Antisense, RP_050808_02_A03, Mouse strain C57BL/6J (56 days, male) 3.0

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