MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.8 nTPM
HPA Brain:70.3 nTPM
GTEx:19.8 nTPM
FANTOM5:154.2 Scaled Tags Per Million
Pig:58.0 nTPM
Mouse:18.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.7
1870 Female, age 42, unknown 68.3
2828 Female, age 72, unknown 65.9
1830 Male, age 51, unknown 63.8
1827 Male, age 72, unknown 62.5
1833 Male, age 53, unknown 61.7
2219 Male, age 76, both hemispheres 59.9
2411 Female, age 72, unknown 59.3
2019 Male, age 18, unknown 56.7
2666 Male, age 74, left hemisphere 51.3
2586 Male, age 75, left hemisphere 47.9
Dorsal raphe nucleus
nTPM: 68.2
2016 Female, age 72, unknown 77.5
2298 Female, age 72, unknown 75.9
2047 Male, age 72, unknown 63.7
2750 Male, age 76, both hemispheres 62.0
1828 Male, age 53, unknown 61.8
Inferior colliculus
nTPM: 61.9
1848 Female, age 42, unknown 68.7
2849 Male, age 72, unknown 60.9
2097 Female, age 72, unknown 60.3
1890 Male, age 53, unknown 57.8
Median raphe nucleus
nTPM: 70.3
2220 Male, age 76, midline 70.3
Periaquaductal grey, anterior
nTPM: 67.4
1947 Male, age 18, unknown 74.6
2502 Female, age 75, unknown 67.4
1795 Male, age 51, unknown 60.1
Periaquaductal grey, dorsal
nTPM: 68.9
2850 Male, age 76, both hemispheres 73.2
2464 Female, age 72, unknown 70.2
1840 Male, age 53, unknown 67.9
1831 Male, age 72, unknown 64.3
Periaquaductal grey, lateral
nTPM: 68.5
2272 Male, age 74, both hemispheres 69.7
2140 Male, age 76, both hemispheres 68.4
2053 Male, age 18, unknown 67.5
Pretectal area
nTPM: 63.2
2224 Female, age 72, unknown 70.2
2667 Female, age 75, unknown 70.0
1815 Male, age 53, unknown 68.2
1944 Female, age 72, unknown 65.4
2316 Male, age 76, right hemisphere 65.2
2273 Male, age 74, both hemispheres 64.1
1816 Male, age 51, unknown 63.8
1817 Female, age 42, unknown 61.0
2825 Male, age 18, unknown 58.0
2407 Male, age 75, both hemispheres 55.3
2007 Male, age 72, unknown 54.4
Red nucleus
nTPM: 66.1
2823 Male, age 76, right hemisphere 76.5
2503 Female, age 72, unknown 76.0
1865 Male, age 51, unknown 69.7
2227 Male, age 72, unknown 69.1
2725 Female, age 75, unknown 67.7
1821 Female, age 72, unknown 66.8
1904 Male, age 53, unknown 65.8
1954 Female, age 42, unknown 65.7
2769 Male, age 72, unknown 63.7
2785 Male, age 18, unknown 61.8
2588 Male, age 74, left hemisphere 58.7
2584 Male, age 75, left hemisphere 51.2
Substantia nigra
nTPM: 62.5
2699 Male, age 18, unknown 76.0
2241 Male, age 72, unknown 72.2
1889 Female, age 72, unknown 66.2
1916 Female, age 42, unknown 64.3
2409 Female, age 72, unknown 63.1
1941 Male, age 53, unknown 60.3
1851 Male, age 51, unknown 59.9
2665 Male, age 74, both hemispheres 56.8
2590 Female, age 75, unknown 53.6
2583 Male, age 75, right hemisphere 52.5
Superior colliculus
nTPM: 61.1
1796 Male, age 53, unknown 67.1
1995 Male, age 72, unknown 65.5
1839 Male, age 51, unknown 65.2
2587 Male, age 74, left hemisphere 65.0
2668 Female, age 75, unknown 61.4
1895 Male, age 76, right hemisphere 60.3
2087 Female, age 72, unknown 58.2
1913 Female, age 42, unknown 57.5
2664 Male, age 75, both hemispheres 55.7
2261 Male, age 18, unknown 55.0
Ventral tegmental area
nTPM: 60.5
2218 Male, age 76, both hemispheres 67.3
1915 Female, age 42, unknown 63.9
2021 Male, age 53, unknown 59.7
2223 Female, age 72, unknown 58.3
2410 Female, age 72, unknown 57.1
1942 Male, age 51, unknown 56.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.8
Samples: 139

Max nTPM: 47.3
Min nTPM: 3.1
Std nTPM: 5.8
Median nTPM: 19.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 47.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 45.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 41.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 32.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 32.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 31.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 31.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 30.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 28.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 28.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 27.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.2
FF:10158-103A5 76 years, female 154.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.6
Samples: 4

Max nTPM: 62.9
Min nTPM: 50.3
Sample A Female 62.9
Sample B Female 50.6
Sample C Male 50.5
Sample D Male 50.3
Midbrain
nTPM: 55.9
Samples: 4

Max nTPM: 69.5
Min nTPM: 42.8
Sample A Female 69.5
Sample B Female 53.1
Sample C Male 58.3
Sample D Male 42.8
Periaqueductal gray
nTPM: 53.8
Samples: 3

Max nTPM: 58.2
Min nTPM: 49.5
Sample B Female 53.8
Sample C Male 58.2
Sample D Male 49.5
Superior colliculi
nTPM: 58.0
Samples: 4

Max nTPM: 63.8
Min nTPM: 53.6
Sample A Female 63.8
Sample B Female 55.1
Sample C Male 59.5
Sample D Male 53.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 19.3
Min nTPM: 18.3
Sample A Male 18.4
Sample B Male 18.3
Sample C Female 19.3
Sample D Female 19.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68301192 Antisense, RP_041129_02_G06, Mouse strain C57BL/6J (56 days, male) 0.0

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