MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.6 nTPM
HPA Brain:165.1 nTPM
GTEx:50.6 nTPM
FANTOM5:541.6 Scaled Tags Per Million
Pig:84.4 nTPM
Mouse:32.1 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 165.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.3
2586 Male, age 75, left hemisphere 150.6
1870 Female, age 42, unknown 143.9
1833 Male, age 53, unknown 138.5
2019 Male, age 18, unknown 138.2
2828 Female, age 72, unknown 136.7
1827 Male, age 72, unknown 135.2
1830 Male, age 51, unknown 133.2
2219 Male, age 76, both hemispheres 128.7
2411 Female, age 72, unknown 121.2
2666 Male, age 74, left hemisphere 96.8
Dorsal raphe nucleus
nTPM: 133.0
2298 Female, age 72, unknown 157.2
2016 Female, age 72, unknown 153.2
1828 Male, age 53, unknown 121.9
2750 Male, age 76, both hemispheres 116.9
2047 Male, age 72, unknown 115.9
Inferior colliculus
nTPM: 152.4
2849 Male, age 72, unknown 159.4
1848 Female, age 42, unknown 158.8
2097 Female, age 72, unknown 152.3
1890 Male, age 53, unknown 138.9
Median raphe nucleus
nTPM: 149.1
2220 Male, age 76, midline 149.1
Periaquaductal grey, anterior
nTPM: 149.9
2502 Female, age 75, unknown 162.3
1947 Male, age 18, unknown 147.9
1795 Male, age 51, unknown 139.5
Periaquaductal grey, dorsal
nTPM: 165.1
2850 Male, age 76, both hemispheres 215.2
1840 Male, age 53, unknown 172.6
1831 Male, age 72, unknown 142.7
2464 Female, age 72, unknown 129.9
Periaquaductal grey, lateral
nTPM: 164.6
2140 Male, age 76, both hemispheres 201.5
2272 Male, age 74, both hemispheres 149.2
2053 Male, age 18, unknown 143.1
Pretectal area
nTPM: 140.7
2273 Male, age 74, both hemispheres 173.9
2316 Male, age 76, right hemisphere 159.4
2667 Female, age 75, unknown 151.4
2224 Female, age 72, unknown 151.1
1817 Female, age 42, unknown 139.6
1815 Male, age 53, unknown 134.6
1816 Male, age 51, unknown 134.2
2825 Male, age 18, unknown 133.1
2407 Male, age 75, both hemispheres 126.4
2007 Male, age 72, unknown 125.0
1944 Female, age 72, unknown 118.6
Red nucleus
nTPM: 127.2
2785 Male, age 18, unknown 145.3
1821 Female, age 72, unknown 139.8
2503 Female, age 72, unknown 139.7
2227 Male, age 72, unknown 138.1
1904 Male, age 53, unknown 137.2
2769 Male, age 72, unknown 135.4
1954 Female, age 42, unknown 129.7
1865 Male, age 51, unknown 123.3
2584 Male, age 75, left hemisphere 117.9
2823 Male, age 76, right hemisphere 115.4
2725 Female, age 75, unknown 102.7
2588 Male, age 74, left hemisphere 101.6
Substantia nigra
nTPM: 147.7
2665 Male, age 74, both hemispheres 168.1
1916 Female, age 42, unknown 163.7
2699 Male, age 18, unknown 158.5
1851 Male, age 51, unknown 158.2
2241 Male, age 72, unknown 152.7
2590 Female, age 75, unknown 145.1
1941 Male, age 53, unknown 137.0
1889 Female, age 72, unknown 132.2
2409 Female, age 72, unknown 132.1
2583 Male, age 75, right hemisphere 129.3
Superior colliculus
nTPM: 147.3
2664 Male, age 75, both hemispheres 163.1
1995 Male, age 72, unknown 161.5
2668 Female, age 75, unknown 155.7
1796 Male, age 53, unknown 154.5
1913 Female, age 42, unknown 152.5
1839 Male, age 51, unknown 152.4
2587 Male, age 74, left hemisphere 145.8
2261 Male, age 18, unknown 136.1
2087 Female, age 72, unknown 131.3
1895 Male, age 76, right hemisphere 120.2
Ventral tegmental area
nTPM: 143.9
2021 Male, age 53, unknown 148.1
2218 Male, age 76, both hemispheres 147.1
2223 Female, age 72, unknown 146.9
1942 Male, age 51, unknown 145.3
1915 Female, age 42, unknown 144.3
2410 Female, age 72, unknown 132.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.6
Samples: 139

Max nTPM: 164.2
Min nTPM: 22.2
Std nTPM: 18.3
Median nTPM: 48.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 164.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 106.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 105.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 95.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 92.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 92.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 84.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 80.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 79.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 77.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 74.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 541.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 541.6
FF:10158-103A5 76 years, female 541.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.1
Samples: 4

Max nTPM: 92.1
Min nTPM: 73.6
Sample A Female 92.1
Sample B Female 82.7
Sample C Male 88.1
Sample D Male 73.6
Midbrain
nTPM: 84.4
Samples: 4

Max nTPM: 94.1
Min nTPM: 79.6
Sample A Female 94.1
Sample B Female 82.6
Sample C Male 81.2
Sample D Male 79.6
Periaqueductal gray
nTPM: 82.2
Samples: 3

Max nTPM: 89.4
Min nTPM: 71.4
Sample B Female 71.4
Sample C Male 89.4
Sample D Male 85.8
Superior colliculi
nTPM: 78.7
Samples: 4

Max nTPM: 84.1
Min nTPM: 73.0
Sample A Female 78.4
Sample B Female 73.0
Sample C Male 79.2
Sample D Male 84.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.1
Samples: 4

Max nTPM: 34.2
Min nTPM: 29.1
Sample A Male 31.7
Sample B Male 34.2
Sample C Female 33.4
Sample D Female 29.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
2502 Antisense, RP_Baylor_103331, Mouse strain C57BL/6J (56 days, male) 2.7
2501 Antisense, RP_Baylor_103331, Mouse strain C57BL/6J (56 days, male) 1.0

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