MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:31.1 nTPM
GTEx:9.5 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:19.9 nTPM
Mouse:39.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.6
2666 Male, age 74, left hemisphere 32.6
1870 Female, age 42, unknown 29.3
2411 Female, age 72, unknown 29.3
1827 Male, age 72, unknown 27.7
1830 Male, age 51, unknown 27.4
1833 Male, age 53, unknown 26.4
2586 Male, age 75, left hemisphere 25.8
2019 Male, age 18, unknown 23.7
2828 Female, age 72, unknown 23.3
2219 Male, age 76, both hemispheres 20.5
Dorsal raphe nucleus
nTPM: 24.9
2750 Male, age 76, both hemispheres 29.5
2047 Male, age 72, unknown 26.4
2298 Female, age 72, unknown 24.9
2016 Female, age 72, unknown 22.2
1828 Male, age 53, unknown 21.6
Inferior colliculus
nTPM: 24.1
2097 Female, age 72, unknown 25.1
1848 Female, age 42, unknown 25.0
2849 Male, age 72, unknown 23.3
1890 Male, age 53, unknown 22.8
Median raphe nucleus
nTPM: 30.6
2220 Male, age 76, midline 30.6
Periaquaductal grey, anterior
nTPM: 31.1
1947 Male, age 18, unknown 35.4
2502 Female, age 75, unknown 31.2
1795 Male, age 51, unknown 26.9
Periaquaductal grey, dorsal
nTPM: 23.3
1840 Male, age 53, unknown 26.3
2464 Female, age 72, unknown 25.7
2850 Male, age 76, both hemispheres 21.4
1831 Male, age 72, unknown 19.8
Periaquaductal grey, lateral
nTPM: 22.6
2053 Male, age 18, unknown 24.6
2140 Male, age 76, both hemispheres 23.1
2272 Male, age 74, both hemispheres 20.1
Pretectal area
nTPM: 25.2
2007 Male, age 72, unknown 30.0
2224 Female, age 72, unknown 27.7
1815 Male, age 53, unknown 27.4
2825 Male, age 18, unknown 26.8
1817 Female, age 42, unknown 26.7
2407 Male, age 75, both hemispheres 25.8
2316 Male, age 76, right hemisphere 24.8
1816 Male, age 51, unknown 24.5
1944 Female, age 72, unknown 23.8
2667 Female, age 75, unknown 20.7
2273 Male, age 74, both hemispheres 19.2
Red nucleus
nTPM: 22.4
1865 Male, age 51, unknown 25.4
2584 Male, age 75, left hemisphere 25.1
1904 Male, age 53, unknown 24.2
2785 Male, age 18, unknown 24.2
2503 Female, age 72, unknown 22.4
1954 Female, age 42, unknown 21.5
2227 Male, age 72, unknown 21.5
2588 Male, age 74, left hemisphere 21.5
1821 Female, age 72, unknown 21.3
2823 Male, age 76, right hemisphere 20.8
2725 Female, age 75, unknown 20.6
2769 Male, age 72, unknown 20.6
Substantia nigra
nTPM: 22.5
2583 Male, age 75, right hemisphere 27.1
1889 Female, age 72, unknown 25.9
2409 Female, age 72, unknown 25.7
2241 Male, age 72, unknown 25.1
2590 Female, age 75, unknown 22.3
1851 Male, age 51, unknown 22.1
2665 Male, age 74, both hemispheres 22.1
1916 Female, age 42, unknown 19.1
1941 Male, age 53, unknown 18.9
2699 Male, age 18, unknown 16.9
Superior colliculus
nTPM: 25.0
2668 Female, age 75, unknown 32.4
1895 Male, age 76, right hemisphere 27.3
1839 Male, age 51, unknown 25.4
2261 Male, age 18, unknown 25.2
1796 Male, age 53, unknown 25.1
2587 Male, age 74, left hemisphere 23.9
1913 Female, age 42, unknown 23.2
2664 Male, age 75, both hemispheres 23.2
1995 Male, age 72, unknown 22.4
2087 Female, age 72, unknown 21.9
Ventral tegmental area
nTPM: 24.2
2223 Female, age 72, unknown 26.0
2021 Male, age 53, unknown 25.2
1942 Male, age 51, unknown 23.9
2218 Male, age 76, both hemispheres 23.8
2410 Female, age 72, unknown 23.6
1915 Female, age 42, unknown 22.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 17.6
Min nTPM: 5.6
Std nTPM: 2.0
Median nTPM: 9.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 17.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 14.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 14.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 13.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 13.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 13.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 13.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 12.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 12.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.9
Samples: 4

Max nTPM: 20.7
Min nTPM: 10.8
Sample A Female 20.7
Sample B Female 12.6
Sample C Male 19.4
Sample D Male 10.8
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 26.0
Min nTPM: 14.2
Sample A Female 15.5
Sample B Female 14.2
Sample C Male 23.9
Sample D Male 26.0
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 19.7
Min nTPM: 14.0
Sample B Female 14.0
Sample C Male 19.7
Sample D Male 14.3
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 21.8
Min nTPM: 11.8
Sample A Female 21.8
Sample B Female 11.8
Sample C Male 18.1
Sample D Male 20.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.3
Samples: 4

Max nTPM: 42.3
Min nTPM: 37.0
Sample A Male 38.2
Sample B Male 39.5
Sample C Female 42.3
Sample D Female 37.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74509560 Antisense, RP_060207_02_H01, Mouse strain C57BL/6J (56 days, male) 0.0

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