MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.4 nTPM
HPA Brain:88.6 nTPM
GTEx:65.4 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:65.9 nTPM
Mouse:18.4 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.3
1870 Female, age 42, unknown 80.2
2828 Female, age 72, unknown 79.8
2666 Male, age 74, left hemisphere 74.2
1830 Male, age 51, unknown 68.3
1833 Male, age 53, unknown 64.3
1827 Male, age 72, unknown 58.9
2411 Female, age 72, unknown 57.1
2586 Male, age 75, left hemisphere 56.8
2019 Male, age 18, unknown 54.2
2219 Male, age 76, both hemispheres 39.1
Dorsal raphe nucleus
nTPM: 88.6
2047 Male, age 72, unknown 95.1
1828 Male, age 53, unknown 92.2
2016 Female, age 72, unknown 92.1
2298 Female, age 72, unknown 90.3
2750 Male, age 76, both hemispheres 73.0
Inferior colliculus
nTPM: 57.8
1890 Male, age 53, unknown 60.2
2097 Female, age 72, unknown 59.3
1848 Female, age 42, unknown 57.8
2849 Male, age 72, unknown 53.9
Median raphe nucleus
nTPM: 74.4
2220 Male, age 76, midline 74.4
Periaquaductal grey, anterior
nTPM: 77.4
1947 Male, age 18, unknown 87.7
1795 Male, age 51, unknown 77.1
2502 Female, age 75, unknown 67.3
Periaquaductal grey, dorsal
nTPM: 78.6
2850 Male, age 76, both hemispheres 111.8
1831 Male, age 72, unknown 78.6
1840 Male, age 53, unknown 66.9
2464 Female, age 72, unknown 57.0
Periaquaductal grey, lateral
nTPM: 81.0
2140 Male, age 76, both hemispheres 93.6
2053 Male, age 18, unknown 76.3
2272 Male, age 74, both hemispheres 73.1
Pretectal area
nTPM: 65.7
2273 Male, age 74, both hemispheres 85.6
2224 Female, age 72, unknown 72.2
2825 Male, age 18, unknown 70.9
2316 Male, age 76, right hemisphere 70.6
1817 Female, age 42, unknown 68.4
1815 Male, age 53, unknown 66.4
2407 Male, age 75, both hemispheres 64.6
2667 Female, age 75, unknown 64.3
2007 Male, age 72, unknown 55.3
1816 Male, age 51, unknown 54.4
1944 Female, age 72, unknown 49.7
Red nucleus
nTPM: 69.9
1821 Female, age 72, unknown 80.5
1865 Male, age 51, unknown 80.2
2725 Female, age 75, unknown 79.5
1954 Female, age 42, unknown 78.0
2503 Female, age 72, unknown 71.8
2227 Male, age 72, unknown 70.9
1904 Male, age 53, unknown 70.6
2769 Male, age 72, unknown 70.3
2823 Male, age 76, right hemisphere 69.5
2785 Male, age 18, unknown 60.3
2584 Male, age 75, left hemisphere 56.0
2588 Male, age 74, left hemisphere 51.5
Substantia nigra
nTPM: 72.5
2699 Male, age 18, unknown 100.2
2665 Male, age 74, both hemispheres 80.1
2590 Female, age 75, unknown 78.7
1851 Male, age 51, unknown 78.2
2409 Female, age 72, unknown 75.9
1916 Female, age 42, unknown 69.9
2583 Male, age 75, right hemisphere 65.8
1889 Female, age 72, unknown 61.6
2241 Male, age 72, unknown 58.4
1941 Male, age 53, unknown 55.9
Superior colliculus
nTPM: 65.8
1995 Male, age 72, unknown 90.2
1913 Female, age 42, unknown 88.4
2587 Male, age 74, left hemisphere 76.8
2664 Male, age 75, both hemispheres 63.7
1796 Male, age 53, unknown 62.6
1839 Male, age 51, unknown 62.5
2668 Female, age 75, unknown 59.0
2087 Female, age 72, unknown 55.9
2261 Male, age 18, unknown 51.2
1895 Male, age 76, right hemisphere 47.9
Ventral tegmental area
nTPM: 80.2
2021 Male, age 53, unknown 101.3
2223 Female, age 72, unknown 85.3
1915 Female, age 42, unknown 79.0
2218 Male, age 76, both hemispheres 74.1
2410 Female, age 72, unknown 71.5
1942 Male, age 51, unknown 70.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.4
Samples: 139

Max nTPM: 139.2
Min nTPM: 12.4
Std nTPM: 24.3
Median nTPM: 61.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 139.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 138.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 131.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 130.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 130.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 128.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 123.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 113.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 110.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 108.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 108.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.9
Samples: 4

Max nTPM: 75.0
Min nTPM: 55.1
Sample A Female 69.3
Sample B Female 75.0
Sample C Male 55.1
Sample D Male 64.0
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 111.0
Min nTPM: 31.6
Sample A Female 111.0
Sample B Female 59.6
Sample C Male 39.1
Sample D Male 31.6
Periaqueductal gray
nTPM: 58.0
Samples: 3

Max nTPM: 66.4
Min nTPM: 48.0
Sample B Female 66.4
Sample C Male 59.5
Sample D Male 48.0
Superior colliculi
nTPM: 56.0
Samples: 4

Max nTPM: 69.9
Min nTPM: 41.8
Sample A Female 62.2
Sample B Female 69.9
Sample C Male 41.8
Sample D Male 50.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 19.2
Min nTPM: 17.7
Sample A Male 19.1
Sample B Male 17.9
Sample C Female 19.2
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
74658085 Antisense, RP_060220_04_D11, Mouse strain C57BL/6J (56 days, male) 0.8
71489779 Antisense, RP_050505_01_H03, Mouse strain C57BL/6J (56 days, male) 0.5

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