MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.1 nTPM
HPA Brain:58.2 nTPM
GTEx:41.1 nTPM
FANTOM5:131.2 Scaled Tags Per Million
Mouse:18.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.4
1870 Female, age 42, unknown 59.1
2019 Male, age 18, unknown 53.0
1833 Male, age 53, unknown 52.7
1830 Male, age 51, unknown 52.4
2828 Female, age 72, unknown 50.7
2411 Female, age 72, unknown 49.1
1827 Male, age 72, unknown 48.0
2219 Male, age 76, both hemispheres 46.6
2586 Male, age 75, left hemisphere 42.3
2666 Male, age 74, left hemisphere 40.1
Dorsal raphe nucleus
nTPM: 52.5
2750 Male, age 76, both hemispheres 57.0
2016 Female, age 72, unknown 55.1
2298 Female, age 72, unknown 53.2
1828 Male, age 53, unknown 51.4
2047 Male, age 72, unknown 45.8
Inferior colliculus
nTPM: 51.2
1890 Male, age 53, unknown 53.9
1848 Female, age 42, unknown 51.3
2849 Male, age 72, unknown 49.9
2097 Female, age 72, unknown 49.8
Median raphe nucleus
nTPM: 49.2
2220 Male, age 76, midline 49.2
Periaquaductal grey, anterior
nTPM: 50.8
2502 Female, age 75, unknown 54.5
1947 Male, age 18, unknown 51.1
1795 Male, age 51, unknown 46.8
Periaquaductal grey, dorsal
nTPM: 51.5
2850 Male, age 76, both hemispheres 55.0
1840 Male, age 53, unknown 53.8
1831 Male, age 72, unknown 51.1
2464 Female, age 72, unknown 46.1
Periaquaductal grey, lateral
nTPM: 58.2
2272 Male, age 74, both hemispheres 61.7
2140 Male, age 76, both hemispheres 60.2
2053 Male, age 18, unknown 52.5
Pretectal area
nTPM: 54.5
2273 Male, age 74, both hemispheres 60.7
2316 Male, age 76, right hemisphere 59.8
2407 Male, age 75, both hemispheres 58.4
2224 Female, age 72, unknown 58.3
2667 Female, age 75, unknown 58.3
1815 Male, age 53, unknown 52.1
2825 Male, age 18, unknown 51.5
1944 Female, age 72, unknown 50.9
2007 Male, age 72, unknown 50.7
1816 Male, age 51, unknown 49.8
1817 Female, age 42, unknown 49.2
Red nucleus
nTPM: 57.0
1865 Male, age 51, unknown 66.6
2503 Female, age 72, unknown 64.6
1954 Female, age 42, unknown 59.8
2769 Male, age 72, unknown 59.6
2227 Male, age 72, unknown 58.4
2823 Male, age 76, right hemisphere 57.8
2785 Male, age 18, unknown 56.9
1821 Female, age 72, unknown 56.1
1904 Male, age 53, unknown 55.6
2725 Female, age 75, unknown 53.0
2584 Male, age 75, left hemisphere 48.8
2588 Male, age 74, left hemisphere 47.0
Substantia nigra
nTPM: 51.3
2590 Female, age 75, unknown 57.0
2241 Male, age 72, unknown 54.9
2665 Male, age 74, both hemispheres 53.9
1851 Male, age 51, unknown 52.8
2699 Male, age 18, unknown 52.4
2409 Female, age 72, unknown 50.9
1889 Female, age 72, unknown 50.7
2583 Male, age 75, right hemisphere 48.7
1916 Female, age 42, unknown 46.9
1941 Male, age 53, unknown 45.0
Superior colliculus
nTPM: 51.4
1913 Female, age 42, unknown 59.4
1995 Male, age 72, unknown 57.1
2587 Male, age 74, left hemisphere 54.3
1895 Male, age 76, right hemisphere 53.7
2261 Male, age 18, unknown 53.5
2087 Female, age 72, unknown 53.3
1796 Male, age 53, unknown 51.6
1839 Male, age 51, unknown 47.3
2668 Female, age 75, unknown 42.6
2664 Male, age 75, both hemispheres 40.9
Ventral tegmental area
nTPM: 52.7
2223 Female, age 72, unknown 57.6
2021 Male, age 53, unknown 54.5
1942 Male, age 51, unknown 51.9
1915 Female, age 42, unknown 51.4
2218 Male, age 76, both hemispheres 50.8
2410 Female, age 72, unknown 50.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.1
Samples: 139

Max nTPM: 76.2
Min nTPM: 19.0
Std nTPM: 9.5
Median nTPM: 40.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 76.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 72.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 65.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 65.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 64.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 63.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 62.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 59.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 58.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 57.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 54.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.2
FF:10158-103A5 76 years, female 131.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 19.2
Min nTPM: 17.2
Sample A Male 18.3
Sample B Male 19.2
Sample C Female 19.2
Sample D Female 17.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
75043154 Antisense, RP_060412_05_B05, Mouse strain C57BL/6J (56 days, male) 0.3
71724660 Antisense, RP_050921_01_D06, Mouse strain C57BL/6J (56 days, male) 0.0

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