HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:65.4 nTPM
HPA Brain:27.7 nTPM
GTEx:65.4 nTPM
FANTOM5:71.2 Scaled Tags Per Million
Pig:62.2 nTPM
Mouse:81.1 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028956
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Hippocampus
nTPM: 23.3
1898 Male, age 80, left hemisphere 29.7
1855 Male, age 76, left hemisphere 23.6
2148 Female, age 91, left hemisphere 22.3
2529 Female, age 94, left hemisphere 21.6
2621 Female, age 67, right hemisphere 21.5
1911 Female, age 85, right hemisphere 21.4
Dentate gyrus
nTPM: 24.5
2010 Male, age 76, both hemispheres 30.8
1927 Female, age 91, both hemispheres 26.6
2246 Female, age 85, both hemispheres 25.7
2528 Male, age 74, both hemispheres 24.6
2530 Female, age 94, left hemisphere 21.7
2531 Female, age 67, both hemispheres 17.6
Entorhinal gyrus
nTPM: 18.3
1938 Female, age 85, left hemisphere 21.9
2117 Female, age 91, right hemisphere 21.7
1787 Male, age 76, left hemisphere 19.1
2764 Male, age 80, right hemisphere 17.7
2613 Female, age 94, left hemisphere 16.2
2686 Male, age 75, right hemisphere 13.3
Hippocampus, CA1
nTPM: 26.0
2749 Male, age 80, left hemisphere 30.3
2082 Female, age 91, right hemisphere 29.2
1873 Female, age 85, both hemispheres 26.6
2045 Male, age 76, both hemispheres 22.6
2527 Male, age 74, both hemispheres 21.2
Hippocampus, CA2
nTPM: 27.7
2249 Male, age 74, both hemispheres 42.9
1940 Female, age 85, left hemisphere 27.5
1892 Male, age 76, both hemispheres 26.7
1963 Male, age 80, left hemisphere 26.4
2113 Female, age 91, right hemisphere 23.8
2437 Female, age 94, left hemisphere 19.0
Hippocampus, CA3
nTPM: 23.4
2436 Male, age 74, both hemispheres 36.6
2137 Male, age 80, left hemisphere 28.8
1867 Male, age 76, both hemispheres 22.6
1891 Female, age 85, both hemispheres 19.6
2620 Female, age 94, left hemisphere 17.7
2861 Female, age 67, both hemispheres 15.1
Parahippocampal cortex
nTPM: 19.3
1850 Male, age 80, both hemispheres 23.6
2245 Female, age 91, both hemispheres 23.4
2250 Female, age 67, right hemisphere 22.3
1933 Female, age 85, both hemispheres 22.0
1990 Female, age 91, right hemisphere 19.7
2018 Male, age 76, both hemispheres 18.2
2693 Female, age 94, both hemispheres 17.2
2532 Female, age 72, left hemisphere 16.7
2622 Female, age 67, right hemisphere 15.7
2692 Male, age 74, both hemispheres 14.5
Perirhinal gyrus
nTPM: 23.7
1847 Female, age 91, left hemisphere 27.2
2521 Female, age 94, right hemisphere 25.6
1841 Female, age 85, right hemisphere 24.5
1794 Male, age 80, right hemisphere 23.0
2848 Male, age 76, right hemisphere 18.4
Subiculum
nTPM: 19.6
2042 Male, age 76, both hemispheres 20.3
1901 Male, age 80, both hemispheres 20.1
2729 Female, age 91, right hemisphere 19.9
1977 Female, age 85, both hemispheres 19.7
2438 Female, age 94, left hemisphere 19.6
2619 Male, age 74, both hemispheres 17.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 65.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 65.4
Samples: 197

Max nTPM: 239.4
Min nTPM: 21.9
Std nTPM: 25.5
Median nTPM: 60.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 239.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 169.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 158.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 137.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 133.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 127.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 126.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 122.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 122.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 114.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 112.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.2
FF:10169-103B7 60 years, female 103.8
FF:10153-102I9 76 years, female 38.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 62.2
Pig sample Sample description nTPM
Subiculum
nTPM: 45.8
Samples: 4

Max nTPM: 57.0
Min nTPM: 35.8
Sample A Female 57.0
Sample B Female 42.1
Sample C Male 35.8
Sample D Male 48.4
Dorsal hippocampus
nTPM: 62.2
Samples: 4

Max nTPM: 83.5
Min nTPM: 45.2
Sample A Female 83.5
Sample B Female 57.0
Sample C Male 63.2
Sample D Male 45.2
Entorhinal cortex
nTPM: 40.3
Samples: 4

Max nTPM: 47.9
Min nTPM: 32.8
Sample A Female 47.9
Sample B Female 43.0
Sample C Male 37.6
Sample D Male 32.8
Ventral hippocampus
nTPM: 54.3
Samples: 4

Max nTPM: 65.9
Min nTPM: 38.0
Sample A Female 65.9
Sample B Female 38.0
Sample C Male 51.1
Sample D Male 62.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 81.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 74.3
Samples: 4

Max nTPM: 84.1
Min nTPM: 69.8
Sample A Male 69.8
Sample B Male 70.5
Sample C Female 84.1
Sample D Female 72.8
Hippocampal formation
nTPM: 81.1
Samples: 4

Max nTPM: 89.3
Min nTPM: 73.9
Sample A Male 89.3
Sample B Male 75.7
Sample C Female 73.9
Sample D Female 85.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
69838701 Antisense, RP_050317_04_F04, Mouse strain C57BL/6J (56 days, male) 2.4
77910681 Antisense, RP_070208_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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