MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.7 nTPM
HPA Brain:85.4 nTPM
GTEx:33.7 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:70.6 nTPM
Mouse:22.8 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.4
2586 Male, age 75, left hemisphere 97.1
1827 Male, age 72, unknown 79.1
2219 Male, age 76, both hemispheres 70.1
2828 Female, age 72, unknown 68.0
2666 Male, age 74, left hemisphere 56.8
2411 Female, age 72, unknown 54.6
1833 Male, age 53, unknown 53.7
1870 Female, age 42, unknown 50.6
1830 Male, age 51, unknown 47.6
2019 Male, age 18, unknown 46.3
Dorsal raphe nucleus
nTPM: 71.7
2298 Female, age 72, unknown 92.8
2047 Male, age 72, unknown 87.7
2750 Male, age 76, both hemispheres 63.1
1828 Male, age 53, unknown 58.8
2016 Female, age 72, unknown 56.1
Inferior colliculus
nTPM: 76.7
2849 Male, age 72, unknown 84.9
2097 Female, age 72, unknown 77.9
1848 Female, age 42, unknown 77.7
1890 Male, age 53, unknown 66.3
Median raphe nucleus
nTPM: 85.4
2220 Male, age 76, midline 85.4
Periaquaductal grey, anterior
nTPM: 80.3
1795 Male, age 51, unknown 91.7
1947 Male, age 18, unknown 81.4
2502 Female, age 75, unknown 67.7
Periaquaductal grey, dorsal
nTPM: 74.3
1840 Male, age 53, unknown 86.5
2850 Male, age 76, both hemispheres 83.6
1831 Male, age 72, unknown 68.5
2464 Female, age 72, unknown 58.8
Periaquaductal grey, lateral
nTPM: 74.3
2140 Male, age 76, both hemispheres 85.9
2272 Male, age 74, both hemispheres 68.8
2053 Male, age 18, unknown 68.3
Pretectal area
nTPM: 70.3
1816 Male, age 51, unknown 83.9
2224 Female, age 72, unknown 83.0
1944 Female, age 72, unknown 79.0
2007 Male, age 72, unknown 74.0
2825 Male, age 18, unknown 73.8
2667 Female, age 75, unknown 71.8
1817 Female, age 42, unknown 65.7
2273 Male, age 74, both hemispheres 63.1
1815 Male, age 53, unknown 61.1
2316 Male, age 76, right hemisphere 60.0
2407 Male, age 75, both hemispheres 57.8
Red nucleus
nTPM: 45.3
2725 Female, age 75, unknown 68.8
2785 Male, age 18, unknown 52.3
2584 Male, age 75, left hemisphere 47.0
1954 Female, age 42, unknown 45.9
2227 Male, age 72, unknown 45.5
2588 Male, age 74, left hemisphere 44.5
1821 Female, age 72, unknown 43.0
2769 Male, age 72, unknown 41.9
2503 Female, age 72, unknown 40.5
2823 Male, age 76, right hemisphere 40.4
1865 Male, age 51, unknown 36.8
1904 Male, age 53, unknown 36.7
Substantia nigra
nTPM: 67.3
1916 Female, age 42, unknown 94.4
1941 Male, age 53, unknown 77.8
2665 Male, age 74, both hemispheres 73.7
1851 Male, age 51, unknown 67.3
2241 Male, age 72, unknown 64.8
2409 Female, age 72, unknown 62.8
1889 Female, age 72, unknown 62.3
2583 Male, age 75, right hemisphere 62.1
2699 Male, age 18, unknown 55.0
2590 Female, age 75, unknown 53.2
Superior colliculus
nTPM: 62.0
1796 Male, age 53, unknown 87.8
2261 Male, age 18, unknown 80.2
2664 Male, age 75, both hemispheres 79.4
2087 Female, age 72, unknown 74.6
1839 Male, age 51, unknown 65.6
1895 Male, age 76, right hemisphere 61.3
2668 Female, age 75, unknown 55.0
2587 Male, age 74, left hemisphere 46.9
1995 Male, age 72, unknown 35.3
1913 Female, age 42, unknown 34.3
Ventral tegmental area
nTPM: 71.8
2218 Male, age 76, both hemispheres 85.7
1915 Female, age 42, unknown 75.8
2021 Male, age 53, unknown 74.8
1942 Male, age 51, unknown 70.7
2410 Female, age 72, unknown 66.7
2223 Female, age 72, unknown 56.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.7
Samples: 139

Max nTPM: 78.4
Min nTPM: 4.0
Std nTPM: 14.5
Median nTPM: 32.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 78.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 70.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 68.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 63.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 63.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 60.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 57.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 57.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 57.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 56.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.4
FF:10158-103A5 76 years, female 17.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.8
Samples: 4

Max nTPM: 66.8
Min nTPM: 42.0
Sample A Female 66.0
Sample B Female 42.0
Sample C Male 66.8
Sample D Male 48.4
Midbrain
nTPM: 70.6
Samples: 4

Max nTPM: 106.3
Min nTPM: 44.4
Sample A Female 44.4
Sample B Female 57.7
Sample C Male 106.3
Sample D Male 73.9
Periaqueductal gray
nTPM: 50.8
Samples: 3

Max nTPM: 54.0
Min nTPM: 46.1
Sample B Female 54.0
Sample C Male 52.4
Sample D Male 46.1
Superior colliculi
nTPM: 64.9
Samples: 4

Max nTPM: 87.8
Min nTPM: 44.5
Sample A Female 60.4
Sample B Female 44.5
Sample C Male 87.8
Sample D Male 67.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.9
Samples: 4

Max nTPM: 23.7
Min nTPM: 21.5
Sample A Male 21.5
Sample B Male 22.7
Sample C Female 23.5
Sample D Female 23.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
69013017 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 5.5
70301086 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 1.2
70228603 Antisense, RP_050524_04_A05, Mouse strain C57BL/6J (56 days, male) 0.0

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