MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.0 nTPM
HPA Brain:14.5 nTPM
GTEx:62.0 nTPM
FANTOM5:13.1 Scaled Tags Per Million
Pig:34.3 nTPM
Mouse:77.2 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.1
2586 Male, age 75, left hemisphere 17.6
2828 Female, age 72, unknown 15.2
1827 Male, age 72, unknown 14.0
2411 Female, age 72, unknown 13.9
1870 Female, age 42, unknown 13.4
2019 Male, age 18, unknown 13.3
2666 Male, age 74, left hemisphere 12.8
1830 Male, age 51, unknown 10.7
1833 Male, age 53, unknown 10.3
2219 Male, age 76, both hemispheres 9.6
Dorsal raphe nucleus
nTPM: 14.2
2298 Female, age 72, unknown 16.3
2016 Female, age 72, unknown 15.2
1828 Male, age 53, unknown 14.1
2047 Male, age 72, unknown 13.2
2750 Male, age 76, both hemispheres 12.1
Inferior colliculus
nTPM: 11.9
2097 Female, age 72, unknown 13.9
1890 Male, age 53, unknown 13.3
1848 Female, age 42, unknown 10.9
2849 Male, age 72, unknown 9.5
Median raphe nucleus
nTPM: 11.5
2220 Male, age 76, midline 11.5
Periaquaductal grey, anterior
nTPM: 14.5
2502 Female, age 75, unknown 15.6
1795 Male, age 51, unknown 14.0
1947 Male, age 18, unknown 13.9
Periaquaductal grey, dorsal
nTPM: 11.6
1840 Male, age 53, unknown 13.8
1831 Male, age 72, unknown 11.2
2464 Female, age 72, unknown 11.2
2850 Male, age 76, both hemispheres 10.2
Periaquaductal grey, lateral
nTPM: 11.6
2053 Male, age 18, unknown 12.0
2140 Male, age 76, both hemispheres 12.0
2272 Male, age 74, both hemispheres 10.8
Pretectal area
nTPM: 12.7
2007 Male, age 72, unknown 14.5
2273 Male, age 74, both hemispheres 13.9
1817 Female, age 42, unknown 13.4
2667 Female, age 75, unknown 13.4
1815 Male, age 53, unknown 12.8
1944 Female, age 72, unknown 12.6
1816 Male, age 51, unknown 12.0
2224 Female, age 72, unknown 11.8
2316 Male, age 76, right hemisphere 11.8
2825 Male, age 18, unknown 11.7
2407 Male, age 75, both hemispheres 11.4
Red nucleus
nTPM: 13.2
2503 Female, age 72, unknown 15.2
2769 Male, age 72, unknown 13.9
2227 Male, age 72, unknown 13.6
2785 Male, age 18, unknown 13.6
1904 Male, age 53, unknown 13.3
2725 Female, age 75, unknown 13.3
1954 Female, age 42, unknown 13.2
1821 Female, age 72, unknown 13.1
2588 Male, age 74, left hemisphere 13.1
1865 Male, age 51, unknown 12.6
2584 Male, age 75, left hemisphere 11.9
2823 Male, age 76, right hemisphere 11.4
Substantia nigra
nTPM: 13.5
1851 Male, age 51, unknown 17.0
1916 Female, age 42, unknown 16.0
2241 Male, age 72, unknown 14.4
2665 Male, age 74, both hemispheres 14.2
2409 Female, age 72, unknown 13.2
2699 Male, age 18, unknown 12.6
2583 Male, age 75, right hemisphere 12.4
1889 Female, age 72, unknown 12.0
1941 Male, age 53, unknown 12.0
2590 Female, age 75, unknown 11.1
Superior colliculus
nTPM: 12.3
1796 Male, age 53, unknown 13.7
2664 Male, age 75, both hemispheres 13.7
2261 Male, age 18, unknown 13.3
2668 Female, age 75, unknown 12.7
1913 Female, age 42, unknown 12.6
1839 Male, age 51, unknown 12.0
1895 Male, age 76, right hemisphere 11.9
1995 Male, age 72, unknown 11.4
2087 Female, age 72, unknown 10.8
2587 Male, age 74, left hemisphere 10.8
Ventral tegmental area
nTPM: 13.2
1915 Female, age 42, unknown 15.8
1942 Male, age 51, unknown 14.3
2410 Female, age 72, unknown 13.9
2021 Male, age 53, unknown 11.9
2218 Male, age 76, both hemispheres 11.9
2223 Female, age 72, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.0
Samples: 139

Max nTPM: 113.7
Min nTPM: 26.9
Std nTPM: 16.9
Median nTPM: 58.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 113.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 111.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 108.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 107.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 104.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 103.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 94.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 93.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 90.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 86.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 86.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.1
FF:10158-103A5 76 years, female 13.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.2
Samples: 4

Max nTPM: 33.9
Min nTPM: 28.2
Sample A Female 29.3
Sample B Female 33.9
Sample C Male 29.5
Sample D Male 28.2
Midbrain
nTPM: 32.7
Samples: 4

Max nTPM: 41.1
Min nTPM: 24.6
Sample A Female 24.6
Sample B Female 41.1
Sample C Male 34.8
Sample D Male 30.1
Periaqueductal gray
nTPM: 27.2
Samples: 3

Max nTPM: 33.0
Min nTPM: 22.1
Sample B Female 33.0
Sample C Male 26.4
Sample D Male 22.1
Superior colliculi
nTPM: 34.3
Samples: 4

Max nTPM: 37.3
Min nTPM: 32.1
Sample A Female 32.1
Sample B Female 33.4
Sample C Male 37.3
Sample D Male 34.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.2
Samples: 4

Max nTPM: 81.8
Min nTPM: 72.4
Sample A Male 79.7
Sample B Male 75.0
Sample C Female 72.4
Sample D Female 81.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
69080040 Antisense, RP_050324_01_F03, Mouse strain C57BL/6J (56 days, male) 5.0

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