MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.0 nTPM
HPA Brain:73.7 nTPM
GTEx:76.0 nTPM
FANTOM5:72.3 Scaled Tags Per Million
Pig:64.2 nTPM
Mouse:89.9 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.7
2586 Male, age 75, left hemisphere 91.3
2411 Female, age 72, unknown 79.1
2666 Male, age 74, left hemisphere 78.1
1827 Male, age 72, unknown 74.9
2019 Male, age 18, unknown 72.9
2828 Female, age 72, unknown 72.2
2219 Male, age 76, both hemispheres 70.7
1870 Female, age 42, unknown 69.0
1833 Male, age 53, unknown 65.6
1830 Male, age 51, unknown 63.1
Dorsal raphe nucleus
nTPM: 60.0
2750 Male, age 76, both hemispheres 74.1
1828 Male, age 53, unknown 58.7
2047 Male, age 72, unknown 58.1
2298 Female, age 72, unknown 57.8
2016 Female, age 72, unknown 51.3
Inferior colliculus
nTPM: 53.1
2849 Male, age 72, unknown 58.3
1848 Female, age 42, unknown 54.9
1890 Male, age 53, unknown 50.0
2097 Female, age 72, unknown 49.1
Median raphe nucleus
nTPM: 64.7
2220 Male, age 76, midline 64.7
Periaquaductal grey, anterior
nTPM: 68.4
1795 Male, age 51, unknown 77.7
1947 Male, age 18, unknown 68.9
2502 Female, age 75, unknown 58.7
Periaquaductal grey, dorsal
nTPM: 53.0
2464 Female, age 72, unknown 56.0
1831 Male, age 72, unknown 55.0
1840 Male, age 53, unknown 54.6
2850 Male, age 76, both hemispheres 46.4
Periaquaductal grey, lateral
nTPM: 51.2
2053 Male, age 18, unknown 56.6
2272 Male, age 74, both hemispheres 51.7
2140 Male, age 76, both hemispheres 45.2
Pretectal area
nTPM: 73.3
2007 Male, age 72, unknown 98.0
1816 Male, age 51, unknown 91.8
1817 Female, age 42, unknown 90.0
1944 Female, age 72, unknown 87.5
1815 Male, age 53, unknown 79.2
2407 Male, age 75, both hemispheres 71.9
2667 Female, age 75, unknown 69.8
2825 Male, age 18, unknown 59.2
2224 Female, age 72, unknown 58.4
2316 Male, age 76, right hemisphere 53.9
2273 Male, age 74, both hemispheres 47.1
Red nucleus
nTPM: 65.2
2584 Male, age 75, left hemisphere 88.1
2785 Male, age 18, unknown 84.4
2588 Male, age 74, left hemisphere 80.6
2503 Female, age 72, unknown 66.5
2769 Male, age 72, unknown 63.6
2823 Male, age 76, right hemisphere 62.9
2227 Male, age 72, unknown 60.4
1865 Male, age 51, unknown 59.2
1821 Female, age 72, unknown 57.4
1904 Male, age 53, unknown 57.3
1954 Female, age 42, unknown 55.4
2725 Female, age 75, unknown 46.2
Substantia nigra
nTPM: 61.0
2583 Male, age 75, right hemisphere 83.7
1889 Female, age 72, unknown 75.1
2665 Male, age 74, both hemispheres 71.4
1941 Male, age 53, unknown 70.1
1851 Male, age 51, unknown 61.5
1916 Female, age 42, unknown 57.9
2590 Female, age 75, unknown 51.0
2699 Male, age 18, unknown 49.1
2409 Female, age 72, unknown 47.5
2241 Male, age 72, unknown 42.6
Superior colliculus
nTPM: 72.0
2668 Female, age 75, unknown 133.2
1796 Male, age 53, unknown 75.2
1913 Female, age 42, unknown 74.2
2087 Female, age 72, unknown 72.7
2261 Male, age 18, unknown 69.2
1995 Male, age 72, unknown 66.4
1839 Male, age 51, unknown 61.6
2664 Male, age 75, both hemispheres 58.1
2587 Male, age 74, left hemisphere 56.4
1895 Male, age 76, right hemisphere 52.9
Ventral tegmental area
nTPM: 61.9
2223 Female, age 72, unknown 78.3
2410 Female, age 72, unknown 62.2
2218 Male, age 76, both hemispheres 58.4
1915 Female, age 42, unknown 58.0
1942 Male, age 51, unknown 57.7
2021 Male, age 53, unknown 56.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.0
Samples: 139

Max nTPM: 193.8
Min nTPM: 27.3
Std nTPM: 24.3
Median nTPM: 73.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 193.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 168.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 138.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 137.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 134.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 127.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 120.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 117.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 112.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 111.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 108.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.3
FF:10158-103A5 76 years, female 72.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.5
Samples: 4

Max nTPM: 70.1
Min nTPM: 44.4
Sample A Female 70.1
Sample B Female 44.4
Sample C Male 59.4
Sample D Male 64.0
Midbrain
nTPM: 64.2
Samples: 4

Max nTPM: 103.7
Min nTPM: 46.7
Sample A Female 103.7
Sample B Female 58.6
Sample C Male 46.7
Sample D Male 47.8
Periaqueductal gray
nTPM: 47.5
Samples: 3

Max nTPM: 53.3
Min nTPM: 42.5
Sample B Female 46.8
Sample C Male 53.3
Sample D Male 42.5
Superior colliculi
nTPM: 50.9
Samples: 4

Max nTPM: 57.8
Min nTPM: 38.7
Sample A Female 57.8
Sample B Female 38.7
Sample C Male 51.9
Sample D Male 55.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 89.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.9
Samples: 4

Max nTPM: 95.5
Min nTPM: 84.4
Sample A Male 95.5
Sample B Male 86.0
Sample C Female 84.4
Sample D Female 93.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
69549263 Antisense, RP_050126_01_E06, Mouse strain C57BL/6J (56 days, male) 4.3

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