MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.2 nTPM
HPA Brain:40.4 nTPM
GTEx:54.2 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Pig:48.8 nTPM
Mouse:6.2 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.7
2586 Male, age 75, left hemisphere 46.9
2411 Female, age 72, unknown 35.4
1870 Female, age 42, unknown 34.1
1830 Male, age 51, unknown 33.1
2828 Female, age 72, unknown 32.7
1827 Male, age 72, unknown 31.3
2019 Male, age 18, unknown 30.5
1833 Male, age 53, unknown 29.7
2219 Male, age 76, both hemispheres 28.8
2666 Male, age 74, left hemisphere 24.0
Dorsal raphe nucleus
nTPM: 32.3
2298 Female, age 72, unknown 37.6
2750 Male, age 76, both hemispheres 34.6
2016 Female, age 72, unknown 31.5
1828 Male, age 53, unknown 29.8
2047 Male, age 72, unknown 27.7
Inferior colliculus
nTPM: 27.6
2097 Female, age 72, unknown 29.5
1890 Male, age 53, unknown 29.4
1848 Female, age 42, unknown 26.0
2849 Male, age 72, unknown 25.2
Median raphe nucleus
nTPM: 30.7
2220 Male, age 76, midline 30.7
Periaquaductal grey, anterior
nTPM: 40.4
2502 Female, age 75, unknown 46.4
1947 Male, age 18, unknown 37.8
1795 Male, age 51, unknown 36.8
Periaquaductal grey, dorsal
nTPM: 27.2
1831 Male, age 72, unknown 28.2
2464 Female, age 72, unknown 27.5
1840 Male, age 53, unknown 27.4
2850 Male, age 76, both hemispheres 25.8
Periaquaductal grey, lateral
nTPM: 28.1
2272 Male, age 74, both hemispheres 32.3
2053 Male, age 18, unknown 26.8
2140 Male, age 76, both hemispheres 25.1
Pretectal area
nTPM: 29.9
2273 Male, age 74, both hemispheres 35.1
2825 Male, age 18, unknown 32.6
2007 Male, age 72, unknown 32.0
1815 Male, age 53, unknown 31.4
2316 Male, age 76, right hemisphere 30.3
2224 Female, age 72, unknown 29.1
1944 Female, age 72, unknown 28.7
1816 Male, age 51, unknown 28.5
1817 Female, age 42, unknown 28.5
2667 Female, age 75, unknown 27.3
2407 Male, age 75, both hemispheres 25.9
Red nucleus
nTPM: 34.0
2769 Male, age 72, unknown 39.4
2503 Female, age 72, unknown 39.2
2227 Male, age 72, unknown 38.3
2584 Male, age 75, left hemisphere 37.3
1954 Female, age 42, unknown 35.7
1904 Male, age 53, unknown 33.8
2785 Male, age 18, unknown 33.5
1865 Male, age 51, unknown 32.8
2725 Female, age 75, unknown 31.4
1821 Female, age 72, unknown 29.4
2823 Male, age 76, right hemisphere 29.2
2588 Male, age 74, left hemisphere 28.2
Substantia nigra
nTPM: 32.0
1916 Female, age 42, unknown 39.6
1851 Male, age 51, unknown 36.4
2583 Male, age 75, right hemisphere 34.1
2409 Female, age 72, unknown 33.8
2699 Male, age 18, unknown 32.1
1941 Male, age 53, unknown 30.9
2665 Male, age 74, both hemispheres 30.4
1889 Female, age 72, unknown 29.9
2590 Female, age 75, unknown 27.7
2241 Male, age 72, unknown 25.2
Superior colliculus
nTPM: 31.8
2668 Female, age 75, unknown 36.7
1995 Male, age 72, unknown 35.3
1796 Male, age 53, unknown 34.7
2261 Male, age 18, unknown 33.8
1913 Female, age 42, unknown 33.4
2664 Male, age 75, both hemispheres 32.6
2087 Female, age 72, unknown 30.2
1839 Male, age 51, unknown 29.9
2587 Male, age 74, left hemisphere 29.4
1895 Male, age 76, right hemisphere 22.4
Ventral tegmental area
nTPM: 35.0
1915 Female, age 42, unknown 37.9
2223 Female, age 72, unknown 37.0
1942 Male, age 51, unknown 36.8
2021 Male, age 53, unknown 33.5
2218 Male, age 76, both hemispheres 32.8
2410 Female, age 72, unknown 31.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.2
Samples: 139

Max nTPM: 163.8
Min nTPM: 16.8
Std nTPM: 19.9
Median nTPM: 53.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 163.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 115.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 105.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 97.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 94.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 92.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 88.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 86.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 86.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 84.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 82.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.3
FF:10158-103A5 76 years, female 42.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.4
Samples: 4

Max nTPM: 56.7
Min nTPM: 34.2
Sample A Female 56.7
Sample B Female 34.2
Sample C Male 42.3
Sample D Male 36.4
Midbrain
nTPM: 45.8
Samples: 4

Max nTPM: 55.7
Min nTPM: 38.1
Sample A Female 55.7
Sample B Female 38.1
Sample C Male 45.0
Sample D Male 44.5
Periaqueductal gray
nTPM: 31.9
Samples: 3

Max nTPM: 36.4
Min nTPM: 27.8
Sample B Female 27.8
Sample C Male 36.4
Sample D Male 31.6
Superior colliculi
nTPM: 48.8
Samples: 4

Max nTPM: 58.2
Min nTPM: 45.1
Sample A Female 58.2
Sample B Female 45.1
Sample C Male 46.1
Sample D Male 45.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 9.3
Min nTPM: 3.6
Sample A Male 5.4
Sample B Male 3.6
Sample C Female 9.3
Sample D Female 6.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
77923129 Antisense, RP_070219_01_C10, Mouse strain C57BL/6J (56 days, male) 0.9

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