MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.1 nTPM
HPA Brain:44.0 nTPM
GTEx:13.1 nTPM
FANTOM5:15.4 Scaled Tags Per Million
Pig:36.5 nTPM
Mouse:120.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.3
2828 Female, age 72, unknown 24.2
2586 Male, age 75, left hemisphere 23.9
1827 Male, age 72, unknown 22.1
1870 Female, age 42, unknown 19.0
1833 Male, age 53, unknown 17.5
1830 Male, age 51, unknown 15.5
2411 Female, age 72, unknown 11.0
2219 Male, age 76, both hemispheres 10.4
2666 Male, age 74, left hemisphere 10.0
2019 Male, age 18, unknown 8.9
Dorsal raphe nucleus
nTPM: 27.1
1828 Male, age 53, unknown 43.2
2016 Female, age 72, unknown 39.5
2047 Male, age 72, unknown 22.5
2298 Female, age 72, unknown 22.5
2750 Male, age 76, both hemispheres 7.8
Inferior colliculus
nTPM: 31.5
1848 Female, age 42, unknown 34.9
2097 Female, age 72, unknown 33.7
2849 Male, age 72, unknown 30.2
1890 Male, age 53, unknown 27.0
Median raphe nucleus
nTPM: 10.2
2220 Male, age 76, midline 10.2
Periaquaductal grey, anterior
nTPM: 30.4
1947 Male, age 18, unknown 35.2
1795 Male, age 51, unknown 29.3
2502 Female, age 75, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 36.6
2850 Male, age 76, both hemispheres 53.4
1840 Male, age 53, unknown 42.6
1831 Male, age 72, unknown 25.4
2464 Female, age 72, unknown 25.1
Periaquaductal grey, lateral
nTPM: 44.0
2053 Male, age 18, unknown 46.4
2140 Male, age 76, both hemispheres 43.9
2272 Male, age 74, both hemispheres 41.8
Pretectal area
nTPM: 27.9
2273 Male, age 74, both hemispheres 62.6
2825 Male, age 18, unknown 32.9
2224 Female, age 72, unknown 31.1
2316 Male, age 76, right hemisphere 29.3
2407 Male, age 75, both hemispheres 29.0
1944 Female, age 72, unknown 27.9
1816 Male, age 51, unknown 26.4
2667 Female, age 75, unknown 25.8
1817 Female, age 42, unknown 16.3
1815 Male, age 53, unknown 15.4
2007 Male, age 72, unknown 10.6
Red nucleus
nTPM: 16.3
1821 Female, age 72, unknown 24.9
2725 Female, age 75, unknown 24.1
2769 Male, age 72, unknown 21.2
2503 Female, age 72, unknown 21.0
2227 Male, age 72, unknown 19.7
2823 Male, age 76, right hemisphere 17.7
1954 Female, age 42, unknown 16.4
1904 Male, age 53, unknown 13.8
1865 Male, age 51, unknown 12.9
2588 Male, age 74, left hemisphere 11.1
2584 Male, age 75, left hemisphere 6.8
2785 Male, age 18, unknown 6.5
Substantia nigra
nTPM: 24.9
2699 Male, age 18, unknown 39.5
1916 Female, age 42, unknown 36.2
2409 Female, age 72, unknown 31.7
1851 Male, age 51, unknown 28.3
2590 Female, age 75, unknown 25.0
2241 Male, age 72, unknown 24.6
1889 Female, age 72, unknown 21.7
2583 Male, age 75, right hemisphere 15.2
1941 Male, age 53, unknown 13.6
2665 Male, age 74, both hemispheres 12.8
Superior colliculus
nTPM: 26.8
2664 Male, age 75, both hemispheres 41.7
2261 Male, age 18, unknown 35.2
1995 Male, age 72, unknown 32.8
2587 Male, age 74, left hemisphere 29.2
1839 Male, age 51, unknown 27.4
1796 Male, age 53, unknown 27.1
2087 Female, age 72, unknown 21.9
1913 Female, age 42, unknown 18.4
1895 Male, age 76, right hemisphere 17.8
2668 Female, age 75, unknown 16.9
Ventral tegmental area
nTPM: 19.3
1915 Female, age 42, unknown 25.1
2021 Male, age 53, unknown 24.1
2410 Female, age 72, unknown 23.1
1942 Male, age 51, unknown 16.5
2218 Male, age 76, both hemispheres 14.7
2223 Female, age 72, unknown 12.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.1
Samples: 139

Max nTPM: 58.8
Min nTPM: 0.7
Std nTPM: 10.3
Median nTPM: 10.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 58.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 49.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 39.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 39.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 36.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 35.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 33.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 32.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 32.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 31.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 30.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.4
FF:10158-103A5 76 years, female 15.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.7
Samples: 4

Max nTPM: 36.6
Min nTPM: 20.4
Sample A Female 31.6
Sample B Female 20.4
Sample C Male 26.0
Sample D Male 36.6
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 43.9
Min nTPM: 19.0
Sample A Female 19.0
Sample B Female 30.5
Sample C Male 31.0
Sample D Male 43.9
Periaqueductal gray
nTPM: 34.6
Samples: 3

Max nTPM: 38.5
Min nTPM: 28.8
Sample B Female 38.5
Sample C Male 36.6
Sample D Male 28.8
Superior colliculi
nTPM: 36.5
Samples: 4

Max nTPM: 47.8
Min nTPM: 28.6
Sample A Female 39.8
Sample B Female 47.8
Sample C Male 28.6
Sample D Male 29.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 120.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 120.2
Samples: 4

Max nTPM: 124.2
Min nTPM: 115.9
Sample A Male 122.2
Sample B Male 115.9
Sample C Female 118.5
Sample D Female 124.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70302168 Antisense, RP_050607_03_G01, Mouse strain C57BL/6J (56 days, male) 0.0

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