HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:35.5 nTPM
HPA Brain:38.3 nTPM
GTEx:35.5 nTPM
FANTOM5:30.2 Scaled Tags Per Million
Pig:44.8 nTPM
Mouse:73.0 nTPM
Allen mouse:9.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002697
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.3
Sample id Sample description nTPM
Hippocampus
nTPM: 36.3
1898 Male, age 80, left hemisphere 39.3
2621 Female, age 67, right hemisphere 38.3
2148 Female, age 91, left hemisphere 37.8
1855 Male, age 76, left hemisphere 34.7
2529 Female, age 94, left hemisphere 34.6
1911 Female, age 85, right hemisphere 33.1
Dentate gyrus
nTPM: 36.1
1927 Female, age 91, both hemispheres 39.3
2530 Female, age 94, left hemisphere 38.8
2531 Female, age 67, both hemispheres 37.1
2010 Male, age 76, both hemispheres 35.9
2246 Female, age 85, both hemispheres 34.1
2528 Male, age 74, both hemispheres 31.2
Entorhinal gyrus
nTPM: 33.9
1938 Female, age 85, left hemisphere 36.7
2764 Male, age 80, right hemisphere 36.3
1787 Male, age 76, left hemisphere 35.6
2117 Female, age 91, right hemisphere 32.6
2686 Male, age 75, right hemisphere 31.4
2613 Female, age 94, left hemisphere 30.8
Hippocampus, CA1
nTPM: 38.3
2749 Male, age 80, left hemisphere 43.4
1873 Female, age 85, both hemispheres 42.6
2045 Male, age 76, both hemispheres 41.0
2527 Male, age 74, both hemispheres 32.8
2082 Female, age 91, right hemisphere 31.9
Hippocampus, CA2
nTPM: 36.0
1892 Male, age 76, both hemispheres 41.7
1963 Male, age 80, left hemisphere 40.2
1940 Female, age 85, left hemisphere 35.8
2249 Male, age 74, both hemispheres 33.2
2437 Female, age 94, left hemisphere 33.1
2113 Female, age 91, right hemisphere 32.1
Hippocampus, CA3
nTPM: 36.3
2620 Female, age 94, left hemisphere 40.9
1867 Male, age 76, both hemispheres 37.9
2861 Female, age 67, both hemispheres 37.2
2137 Male, age 80, left hemisphere 37.0
1891 Female, age 85, both hemispheres 33.9
2436 Male, age 74, both hemispheres 30.6
Parahippocampal cortex
nTPM: 34.1
2532 Female, age 72, left hemisphere 39.5
1850 Male, age 80, both hemispheres 38.5
1933 Female, age 85, both hemispheres 35.3
2018 Male, age 76, both hemispheres 35.3
2245 Female, age 91, both hemispheres 34.5
2250 Female, age 67, right hemisphere 34.2
2622 Female, age 67, right hemisphere 33.5
1990 Female, age 91, right hemisphere 31.6
2692 Male, age 74, both hemispheres 30.5
2693 Female, age 94, both hemispheres 28.4
Perirhinal gyrus
nTPM: 37.8
1847 Female, age 91, left hemisphere 40.2
1794 Male, age 80, right hemisphere 39.7
1841 Female, age 85, right hemisphere 39.4
2848 Male, age 76, right hemisphere 36.9
2521 Female, age 94, right hemisphere 33.0
Subiculum
nTPM: 33.3
1977 Female, age 85, both hemispheres 35.5
2438 Female, age 94, left hemisphere 34.3
1901 Male, age 80, both hemispheres 34.2
2619 Male, age 74, both hemispheres 32.5
2042 Male, age 76, both hemispheres 31.9
2729 Female, age 91, right hemisphere 31.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.5
Samples: 197

Max nTPM: 48.8
Min nTPM: 26.6
Std nTPM: 4.4
Median nTPM: 34.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 48.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 47.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 47.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 46.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 46.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 46.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 45.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 45.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 45.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 44.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 43.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.2
FF:10153-102I9 76 years, female 35.6
FF:10169-103B7 60 years, female 24.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 44.8
Pig sample Sample description nTPM
Subiculum
nTPM: 41.5
Samples: 4

Max nTPM: 48.0
Min nTPM: 38.7
Sample A Female 48.0
Sample B Female 39.1
Sample C Male 38.7
Sample D Male 40.3
Dorsal hippocampus
nTPM: 44.9
Samples: 4

Max nTPM: 47.7
Min nTPM: 41.1
Sample A Female 47.7
Sample B Female 44.5
Sample C Male 46.1
Sample D Male 41.1
Entorhinal cortex
nTPM: 41.4
Samples: 4

Max nTPM: 44.2
Min nTPM: 38.0
Sample A Female 39.8
Sample B Female 44.2
Sample C Male 43.6
Sample D Male 38.0
Ventral hippocampus
nTPM: 41.8
Samples: 4

Max nTPM: 50.4
Min nTPM: 33.6
Sample A Female 36.6
Sample B Female 33.6
Sample C Male 50.4
Sample D Male 46.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 73.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.9
Samples: 4

Max nTPM: 67.9
Min nTPM: 62.8
Sample A Male 62.8
Sample B Male 65.7
Sample C Female 67.1
Sample D Female 67.9
Hippocampal formation
nTPM: 73.1
Samples: 4

Max nTPM: 75.4
Min nTPM: 71.1
Sample A Male 71.1
Sample B Male 73.1
Sample C Female 75.4
Sample D Female 72.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.1
74819346 Antisense, RP_060315_02_F01, Mouse strain C57BL/6J (56 days, male) 10.5
69838048 Antisense, RP_050224_01_H02, Mouse strain C57BL/6J (56 days, male) 7.7

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