MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.3 nTPM
HPA Brain:56.5 nTPM
GTEx:42.3 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:46.9 nTPM
Allen mouse:8.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.0
2586 Male, age 75, left hemisphere 73.3
1827 Male, age 72, unknown 60.0
2828 Female, age 72, unknown 58.9
2411 Female, age 72, unknown 57.1
1870 Female, age 42, unknown 56.4
2666 Male, age 74, left hemisphere 52.1
1833 Male, age 53, unknown 51.9
2019 Male, age 18, unknown 51.2
1830 Male, age 51, unknown 50.7
2219 Male, age 76, both hemispheres 48.9
Dorsal raphe nucleus
nTPM: 51.3
2750 Male, age 76, both hemispheres 54.2
2298 Female, age 72, unknown 52.3
1828 Male, age 53, unknown 52.2
2047 Male, age 72, unknown 51.7
2016 Female, age 72, unknown 46.2
Inferior colliculus
nTPM: 48.8
2097 Female, age 72, unknown 51.6
1848 Female, age 42, unknown 48.7
1890 Male, age 53, unknown 47.5
2849 Male, age 72, unknown 47.2
Median raphe nucleus
nTPM: 50.0
2220 Male, age 76, midline 50.0
Periaquaductal grey, anterior
nTPM: 56.5
2502 Female, age 75, unknown 57.8
1795 Male, age 51, unknown 56.1
1947 Male, age 18, unknown 55.6
Periaquaductal grey, dorsal
nTPM: 48.3
1840 Male, age 53, unknown 52.8
2464 Female, age 72, unknown 51.3
1831 Male, age 72, unknown 46.1
2850 Male, age 76, both hemispheres 43.0
Periaquaductal grey, lateral
nTPM: 49.8
2053 Male, age 18, unknown 52.2
2140 Male, age 76, both hemispheres 52.2
2272 Male, age 74, both hemispheres 45.0
Pretectal area
nTPM: 54.8
1816 Male, age 51, unknown 61.5
2007 Male, age 72, unknown 59.2
2316 Male, age 76, right hemisphere 57.6
2407 Male, age 75, both hemispheres 57.4
1817 Female, age 42, unknown 56.8
1815 Male, age 53, unknown 56.1
2667 Female, age 75, unknown 54.9
2825 Male, age 18, unknown 54.0
1944 Female, age 72, unknown 51.3
2224 Female, age 72, unknown 46.8
2273 Male, age 74, both hemispheres 46.5
Red nucleus
nTPM: 54.1
2588 Male, age 74, left hemisphere 59.5
2584 Male, age 75, left hemisphere 57.4
1821 Female, age 72, unknown 55.7
2769 Male, age 72, unknown 55.1
2227 Male, age 72, unknown 54.6
2503 Female, age 72, unknown 54.6
1904 Male, age 53, unknown 54.5
1865 Male, age 51, unknown 52.3
2785 Male, age 18, unknown 52.2
1954 Female, age 42, unknown 51.8
2725 Female, age 75, unknown 51.7
2823 Male, age 76, right hemisphere 50.2
Substantia nigra
nTPM: 55.1
1916 Female, age 42, unknown 62.0
1851 Male, age 51, unknown 59.9
2583 Male, age 75, right hemisphere 58.7
2590 Female, age 75, unknown 56.0
2699 Male, age 18, unknown 54.9
2409 Female, age 72, unknown 53.3
2241 Male, age 72, unknown 52.5
2665 Male, age 74, both hemispheres 51.8
1889 Female, age 72, unknown 51.1
1941 Male, age 53, unknown 50.9
Superior colliculus
nTPM: 54.6
2664 Male, age 75, both hemispheres 63.1
1796 Male, age 53, unknown 60.3
2261 Male, age 18, unknown 60.1
2087 Female, age 72, unknown 54.6
2668 Female, age 75, unknown 54.2
1913 Female, age 42, unknown 53.5
1895 Male, age 76, right hemisphere 51.7
1995 Male, age 72, unknown 50.6
1839 Male, age 51, unknown 49.9
2587 Male, age 74, left hemisphere 48.1
Ventral tegmental area
nTPM: 52.3
2410 Female, age 72, unknown 57.9
1915 Female, age 42, unknown 55.4
1942 Male, age 51, unknown 52.8
2218 Male, age 76, both hemispheres 50.0
2223 Female, age 72, unknown 49.1
2021 Male, age 53, unknown 48.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.3
Samples: 139

Max nTPM: 82.0
Min nTPM: 28.8
Std nTPM: 7.3
Median nTPM: 41.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 82.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 72.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 61.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 56.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 55.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 55.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 55.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 53.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 53.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 51.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 51.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.8
Samples: 4

Max nTPM: 32.0
Min nTPM: 28.0
Sample A Female 32.0
Sample B Female 28.0
Sample C Male 31.4
Sample D Male 31.9
Midbrain
nTPM: 30.5
Samples: 4

Max nTPM: 37.3
Min nTPM: 27.6
Sample A Female 37.3
Sample B Female 27.9
Sample C Male 29.2
Sample D Male 27.6
Periaqueductal gray
nTPM: 27.5
Samples: 3

Max nTPM: 29.8
Min nTPM: 25.8
Sample B Female 25.8
Sample C Male 29.8
Sample D Male 26.8
Superior colliculi
nTPM: 29.1
Samples: 4

Max nTPM: 30.8
Min nTPM: 27.5
Sample A Female 29.6
Sample B Female 27.5
Sample C Male 28.6
Sample D Male 30.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 48.6
Min nTPM: 45.5
Sample A Male 47.0
Sample B Male 45.5
Sample C Female 46.4
Sample D Female 48.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.1
512773 Antisense, RP_040809_02_E01, Mouse strain C57BL/6J (56 days, male) 8.1

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