MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:532.5 nTPM
HPA Brain:206.4 nTPM
GTEx:532.5 nTPM
FANTOM5:691.2 Scaled Tags Per Million
Pig:269.6 nTPM
Mouse:477.0 nTPM
Allen mouse:17.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 206.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 168.8
2586 Male, age 75, left hemisphere 209.3
2411 Female, age 72, unknown 200.5
1870 Female, age 42, unknown 195.6
2019 Male, age 18, unknown 193.5
1830 Male, age 51, unknown 186.5
1833 Male, age 53, unknown 180.2
2666 Male, age 74, left hemisphere 139.2
1827 Male, age 72, unknown 135.6
2828 Female, age 72, unknown 132.8
2219 Male, age 76, both hemispheres 115.3
Dorsal raphe nucleus
nTPM: 141.4
2750 Male, age 76, both hemispheres 185.6
2047 Male, age 72, unknown 144.6
1828 Male, age 53, unknown 137.0
2016 Female, age 72, unknown 124.2
2298 Female, age 72, unknown 115.8
Inferior colliculus
nTPM: 138.7
1890 Male, age 53, unknown 156.4
1848 Female, age 42, unknown 140.2
2097 Female, age 72, unknown 137.9
2849 Male, age 72, unknown 120.2
Median raphe nucleus
nTPM: 151.7
2220 Male, age 76, midline 151.7
Periaquaductal grey, anterior
nTPM: 116.6
1947 Male, age 18, unknown 131.0
2502 Female, age 75, unknown 120.0
1795 Male, age 51, unknown 99.0
Periaquaductal grey, dorsal
nTPM: 106.0
2464 Female, age 72, unknown 123.8
1831 Male, age 72, unknown 108.7
1840 Male, age 53, unknown 99.2
2850 Male, age 76, both hemispheres 92.4
Periaquaductal grey, lateral
nTPM: 104.0
2053 Male, age 18, unknown 127.6
2272 Male, age 74, both hemispheres 96.7
2140 Male, age 76, both hemispheres 87.7
Pretectal area
nTPM: 120.1
1815 Male, age 53, unknown 147.1
1817 Female, age 42, unknown 140.4
2007 Male, age 72, unknown 136.3
2407 Male, age 75, both hemispheres 131.3
2316 Male, age 76, right hemisphere 120.0
2825 Male, age 18, unknown 118.9
2667 Female, age 75, unknown 112.4
1944 Female, age 72, unknown 108.5
2224 Female, age 72, unknown 107.1
1816 Male, age 51, unknown 105.5
2273 Male, age 74, both hemispheres 94.2
Red nucleus
nTPM: 206.4
1821 Female, age 72, unknown 249.5
2588 Male, age 74, left hemisphere 235.8
1904 Male, age 53, unknown 227.1
1865 Male, age 51, unknown 222.8
2227 Male, age 72, unknown 213.3
1954 Female, age 42, unknown 211.1
2769 Male, age 72, unknown 207.5
2503 Female, age 72, unknown 189.0
2823 Male, age 76, right hemisphere 186.9
2785 Male, age 18, unknown 181.0
2584 Male, age 75, left hemisphere 177.8
2725 Female, age 75, unknown 175.5
Substantia nigra
nTPM: 145.3
2583 Male, age 75, right hemisphere 175.8
1851 Male, age 51, unknown 161.9
1889 Female, age 72, unknown 153.9
2241 Male, age 72, unknown 152.3
2409 Female, age 72, unknown 151.8
2590 Female, age 75, unknown 138.1
1916 Female, age 42, unknown 133.1
1941 Male, age 53, unknown 132.4
2665 Male, age 74, both hemispheres 128.3
2699 Male, age 18, unknown 125.3
Superior colliculus
nTPM: 138.2
2668 Female, age 75, unknown 171.0
2587 Male, age 74, left hemisphere 160.0
1913 Female, age 42, unknown 151.9
1839 Male, age 51, unknown 144.4
2664 Male, age 75, both hemispheres 141.7
1995 Male, age 72, unknown 141.5
1895 Male, age 76, right hemisphere 140.2
1796 Male, age 53, unknown 116.1
2261 Male, age 18, unknown 109.1
2087 Female, age 72, unknown 106.3
Ventral tegmental area
nTPM: 157.9
2223 Female, age 72, unknown 229.6
2410 Female, age 72, unknown 165.3
2218 Male, age 76, both hemispheres 146.0
1942 Male, age 51, unknown 141.2
1915 Female, age 42, unknown 138.0
2021 Male, age 53, unknown 127.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 532.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 532.5
Samples: 139

Max nTPM: 1115.0
Min nTPM: 211.6
Std nTPM: 168.3
Median nTPM: 499.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1115.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1086.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1004.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 919.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 913.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 892.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 864.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 860.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 856.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 851.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 811.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 691.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 691.2
FF:10158-103A5 76 years, female 691.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 269.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 204.4
Samples: 4

Max nTPM: 293.2
Min nTPM: 129.9
Sample A Female 222.0
Sample B Female 129.9
Sample C Male 172.4
Sample D Male 293.2
Midbrain
nTPM: 269.6
Samples: 4

Max nTPM: 583.8
Min nTPM: 147.1
Sample A Female 583.8
Sample B Female 198.2
Sample C Male 147.1
Sample D Male 149.3
Periaqueductal gray
nTPM: 153.5
Samples: 3

Max nTPM: 172.3
Min nTPM: 139.6
Sample B Female 172.3
Sample C Male 139.6
Sample D Male 148.6
Superior colliculi
nTPM: 191.5
Samples: 4

Max nTPM: 227.3
Min nTPM: 114.1
Sample A Female 223.8
Sample B Female 114.1
Sample C Male 200.6
Sample D Male 227.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 477.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 477.0
Samples: 4

Max nTPM: 495.2
Min nTPM: 469.2
Sample A Male 470.1
Sample B Male 469.2
Sample C Female 473.6
Sample D Female 495.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
68632051 Antisense, RP_050125_01_F03, Mouse strain C57BL/6J (56 days, male) 17.7

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