HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.5 nTPM
HPA Brain:69.0 nTPM
GTEx:15.5 nTPM
FANTOM5:203.0 Scaled Tags Per Million
Pig:109.7 nTPM
Mouse:98.5 nTPM
Allen mouse:12.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 69.0
Sample id Sample description nTPM
Hippocampus
nTPM: 55.0
2148 Female, age 91, left hemisphere 75.6
1898 Male, age 80, left hemisphere 66.0
2621 Female, age 67, right hemisphere 62.8
1855 Male, age 76, left hemisphere 43.4
1911 Female, age 85, right hemisphere 43.2
2529 Female, age 94, left hemisphere 39.0
Dentate gyrus
nTPM: 62.3
1927 Female, age 91, both hemispheres 84.1
2531 Female, age 67, both hemispheres 76.4
2530 Female, age 94, left hemisphere 58.7
2528 Male, age 74, both hemispheres 53.9
2246 Female, age 85, both hemispheres 53.4
2010 Male, age 76, both hemispheres 47.3
Entorhinal gyrus
nTPM: 59.6
2613 Female, age 94, left hemisphere 84.4
2764 Male, age 80, right hemisphere 67.2
1938 Female, age 85, left hemisphere 61.9
1787 Male, age 76, left hemisphere 54.1
2686 Male, age 75, right hemisphere 53.8
2117 Female, age 91, right hemisphere 36.1
Hippocampus, CA1
nTPM: 55.9
2749 Male, age 80, left hemisphere 77.6
1873 Female, age 85, both hemispheres 62.3
2045 Male, age 76, both hemispheres 56.7
2527 Male, age 74, both hemispheres 45.0
2082 Female, age 91, right hemisphere 38.0
Hippocampus, CA2
nTPM: 52.6
1892 Male, age 76, both hemispheres 83.5
2437 Female, age 94, left hemisphere 61.9
1963 Male, age 80, left hemisphere 55.3
1940 Female, age 85, left hemisphere 41.3
2113 Female, age 91, right hemisphere 38.6
2249 Male, age 74, both hemispheres 34.8
Hippocampus, CA3
nTPM: 69.0
2620 Female, age 94, left hemisphere 98.8
2861 Female, age 67, both hemispheres 85.7
2137 Male, age 80, left hemisphere 69.0
1867 Male, age 76, both hemispheres 67.7
1891 Female, age 85, both hemispheres 57.1
2436 Male, age 74, both hemispheres 35.7
Parahippocampal cortex
nTPM: 57.4
1990 Female, age 91, right hemisphere 69.6
1850 Male, age 80, both hemispheres 67.9
2622 Female, age 67, right hemisphere 67.7
2693 Female, age 94, both hemispheres 62.0
2245 Female, age 91, both hemispheres 59.9
2250 Female, age 67, right hemisphere 54.0
1933 Female, age 85, both hemispheres 53.4
2692 Male, age 74, both hemispheres 53.4
2532 Female, age 72, left hemisphere 51.6
2018 Male, age 76, both hemispheres 34.5
Perirhinal gyrus
nTPM: 65.4
1847 Female, age 91, left hemisphere 86.0
1794 Male, age 80, right hemisphere 68.0
1841 Female, age 85, right hemisphere 61.5
2521 Female, age 94, right hemisphere 56.5
2848 Male, age 76, right hemisphere 55.2
Subiculum
nTPM: 51.3
1977 Female, age 85, both hemispheres 63.5
2438 Female, age 94, left hemisphere 61.8
1901 Male, age 80, both hemispheres 56.8
2619 Male, age 74, both hemispheres 50.7
2729 Female, age 91, right hemisphere 44.8
2042 Male, age 76, both hemispheres 30.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.5
Samples: 197

Max nTPM: 44.6
Min nTPM: 1.4
Std nTPM: 10.0
Median nTPM: 13.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 44.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 44.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 42.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 39.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 38.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 38.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 38.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 37.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 35.5
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 35.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 34.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 203.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 203.0
FF:10169-103B7 60 years, female 290.8
FF:10153-102I9 76 years, female 115.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 109.7
Pig sample Sample description nTPM
Subiculum
nTPM: 80.4
Samples: 4

Max nTPM: 118.6
Min nTPM: 59.9
Sample A Female 118.6
Sample B Female 65.4
Sample C Male 77.7
Sample D Male 59.9
Dorsal hippocampus
nTPM: 104.2
Samples: 4

Max nTPM: 126.6
Min nTPM: 82.2
Sample A Female 120.3
Sample B Female 126.6
Sample C Male 87.5
Sample D Male 82.2
Entorhinal cortex
nTPM: 109.7
Samples: 4

Max nTPM: 124.2
Min nTPM: 100.4
Sample A Female 124.2
Sample B Female 110.1
Sample C Male 100.4
Sample D Male 104.0
Ventral hippocampus
nTPM: 104.3
Samples: 4

Max nTPM: 141.3
Min nTPM: 67.7
Sample A Female 98.3
Sample B Female 67.7
Sample C Male 141.3
Sample D Male 109.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 98.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 98.5
Samples: 4

Max nTPM: 119.5
Min nTPM: 89.0
Sample A Male 89.0
Sample B Male 91.4
Sample C Female 94.1
Sample D Female 119.5
Hippocampal formation
nTPM: 97.9
Samples: 4

Max nTPM: 118.6
Min nTPM: 84.8
Sample A Male 84.8
Sample B Male 102.5
Sample C Female 118.6
Sample D Female 85.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.6
73573157 Antisense, RP_051121_03_D06, Mouse strain C57BL/6J (56 days, male) 14.3
74988751 Antisense, RP_060315_05_G06, Mouse strain C57BL/6J (56 days, male) 12.1
70565945 Antisense, RP_050628_01_G07, Mouse strain C57BL/6J (56 days, male) 11.5

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