MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA Brain:53.5 nTPM
GTEx:10.4 nTPM
FANTOM5:15.4 Scaled Tags Per Million
Pig:77.9 nTPM
Mouse:96.2 nTPM
Allen mouse:10.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.9
1827 Male, age 72, unknown 50.6
2586 Male, age 75, left hemisphere 47.4
2828 Female, age 72, unknown 45.2
2019 Male, age 18, unknown 41.6
2219 Male, age 76, both hemispheres 41.2
2666 Male, age 74, left hemisphere 40.1
2411 Female, age 72, unknown 39.7
1833 Male, age 53, unknown 33.9
1870 Female, age 42, unknown 31.0
1830 Male, age 51, unknown 28.1
Dorsal raphe nucleus
nTPM: 28.4
2298 Female, age 72, unknown 39.4
2750 Male, age 76, both hemispheres 33.0
2047 Male, age 72, unknown 24.6
1828 Male, age 53, unknown 23.0
2016 Female, age 72, unknown 22.0
Inferior colliculus
nTPM: 40.8
2097 Female, age 72, unknown 54.9
1848 Female, age 42, unknown 37.0
2849 Male, age 72, unknown 36.2
1890 Male, age 53, unknown 34.9
Median raphe nucleus
nTPM: 33.6
2220 Male, age 76, midline 33.6
Periaquaductal grey, anterior
nTPM: 43.3
1795 Male, age 51, unknown 47.5
1947 Male, age 18, unknown 42.4
2502 Female, age 75, unknown 39.8
Periaquaductal grey, dorsal
nTPM: 32.5
1840 Male, age 53, unknown 37.3
1831 Male, age 72, unknown 37.0
2464 Female, age 72, unknown 32.9
2850 Male, age 76, both hemispheres 22.6
Periaquaductal grey, lateral
nTPM: 24.3
2053 Male, age 18, unknown 29.6
2140 Male, age 76, both hemispheres 25.9
2272 Male, age 74, both hemispheres 17.5
Pretectal area
nTPM: 53.5
1816 Male, age 51, unknown 91.4
1817 Female, age 42, unknown 78.8
2007 Male, age 72, unknown 78.5
1944 Female, age 72, unknown 76.7
1815 Male, age 53, unknown 74.4
2667 Female, age 75, unknown 44.2
2224 Female, age 72, unknown 33.3
2825 Male, age 18, unknown 31.8
2407 Male, age 75, both hemispheres 31.6
2316 Male, age 76, right hemisphere 29.4
2273 Male, age 74, both hemispheres 18.7
Red nucleus
nTPM: 26.3
2785 Male, age 18, unknown 42.9
2584 Male, age 75, left hemisphere 42.4
2588 Male, age 74, left hemisphere 35.8
2725 Female, age 75, unknown 29.9
1904 Male, age 53, unknown 23.2
1821 Female, age 72, unknown 22.2
2823 Male, age 76, right hemisphere 22.0
1954 Female, age 42, unknown 21.1
2503 Female, age 72, unknown 20.4
2227 Male, age 72, unknown 19.3
2769 Male, age 72, unknown 19.3
1865 Male, age 51, unknown 17.4
Substantia nigra
nTPM: 39.7
1889 Female, age 72, unknown 63.7
2665 Male, age 74, both hemispheres 52.3
1916 Female, age 42, unknown 43.2
2241 Male, age 72, unknown 39.6
1851 Male, age 51, unknown 39.2
2583 Male, age 75, right hemisphere 35.7
2409 Female, age 72, unknown 35.3
1941 Male, age 53, unknown 33.3
2590 Female, age 75, unknown 32.5
2699 Male, age 18, unknown 22.4
Superior colliculus
nTPM: 44.7
2087 Female, age 72, unknown 69.9
1796 Male, age 53, unknown 54.1
2261 Male, age 18, unknown 50.0
2668 Female, age 75, unknown 50.0
2664 Male, age 75, both hemispheres 46.0
1895 Male, age 76, right hemisphere 40.5
1839 Male, age 51, unknown 37.4
1995 Male, age 72, unknown 35.2
1913 Female, age 42, unknown 33.3
2587 Male, age 74, left hemisphere 30.7
Ventral tegmental area
nTPM: 34.5
2218 Male, age 76, both hemispheres 42.8
2410 Female, age 72, unknown 39.4
1915 Female, age 42, unknown 37.1
1942 Male, age 51, unknown 35.8
2021 Male, age 53, unknown 29.2
2223 Female, age 72, unknown 22.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.4
Samples: 139

Max nTPM: 34.7
Min nTPM: 1.5
Std nTPM: 6.8
Median nTPM: 8.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 33.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 30.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 30.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 28.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 26.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 26.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 25.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 23.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 22.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.4
FF:10158-103A5 76 years, female 15.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 77.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.7
Samples: 4

Max nTPM: 64.3
Min nTPM: 8.2
Sample A Female 59.4
Sample B Female 30.8
Sample C Male 64.3
Sample D Male 8.2
Midbrain
nTPM: 78.0
Samples: 4

Max nTPM: 130.1
Min nTPM: 21.4
Sample A Female 21.4
Sample B Female 37.3
Sample C Male 130.1
Sample D Male 123.0
Periaqueductal gray
nTPM: 42.8
Samples: 3

Max nTPM: 55.2
Min nTPM: 35.6
Sample B Female 35.6
Sample C Male 55.2
Sample D Male 37.5
Superior colliculi
nTPM: 74.2
Samples: 4

Max nTPM: 90.3
Min nTPM: 30.3
Sample A Female 86.6
Sample B Female 30.3
Sample C Male 90.3
Sample D Male 89.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.2
Samples: 4

Max nTPM: 108.2
Min nTPM: 85.6
Sample A Male 85.6
Sample B Male 93.7
Sample C Female 108.2
Sample D Female 97.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.4
73573157 Antisense, RP_051121_03_D06, Mouse strain C57BL/6J (56 days, male) 11.2
74988751 Antisense, RP_060315_05_G06, Mouse strain C57BL/6J (56 days, male) 10.0
70565945 Antisense, RP_050628_01_G07, Mouse strain C57BL/6J (56 days, male) 9.9

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