MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.6 nTPM
HPA Brain:38.6 nTPM
GTEx:17.6 nTPM
FANTOM5:17.2 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:43.7 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.2
2586 Male, age 75, left hemisphere 38.8
2219 Male, age 76, both hemispheres 38.5
1827 Male, age 72, unknown 38.2
2666 Male, age 74, left hemisphere 32.5
1870 Female, age 42, unknown 32.4
2828 Female, age 72, unknown 31.8
1833 Male, age 53, unknown 31.5
2411 Female, age 72, unknown 30.3
2019 Male, age 18, unknown 29.1
1830 Male, age 51, unknown 28.9
Dorsal raphe nucleus
nTPM: 31.3
2298 Female, age 72, unknown 38.5
2047 Male, age 72, unknown 37.1
2750 Male, age 76, both hemispheres 32.0
2016 Female, age 72, unknown 24.5
1828 Male, age 53, unknown 24.2
Inferior colliculus
nTPM: 35.0
2849 Male, age 72, unknown 38.2
2097 Female, age 72, unknown 35.9
1848 Female, age 42, unknown 34.7
1890 Male, age 53, unknown 31.2
Median raphe nucleus
nTPM: 38.6
2220 Male, age 76, midline 38.6
Periaquaductal grey, anterior
nTPM: 35.5
1947 Male, age 18, unknown 37.1
1795 Male, age 51, unknown 35.5
2502 Female, age 75, unknown 33.9
Periaquaductal grey, dorsal
nTPM: 30.8
1840 Male, age 53, unknown 37.9
2464 Female, age 72, unknown 31.4
1831 Male, age 72, unknown 28.0
2850 Male, age 76, both hemispheres 26.0
Periaquaductal grey, lateral
nTPM: 28.5
2053 Male, age 18, unknown 31.4
2140 Male, age 76, both hemispheres 27.1
2272 Male, age 74, both hemispheres 27.0
Pretectal area
nTPM: 34.8
2007 Male, age 72, unknown 42.6
1816 Male, age 51, unknown 40.9
1944 Female, age 72, unknown 38.2
1817 Female, age 42, unknown 37.2
2667 Female, age 75, unknown 37.1
2224 Female, age 72, unknown 35.6
1815 Male, age 53, unknown 34.4
2825 Male, age 18, unknown 32.8
2407 Male, age 75, both hemispheres 29.7
2273 Male, age 74, both hemispheres 28.6
2316 Male, age 76, right hemisphere 26.1
Red nucleus
nTPM: 27.5
2584 Male, age 75, left hemisphere 34.7
2725 Female, age 75, unknown 33.6
1821 Female, age 72, unknown 29.9
2785 Male, age 18, unknown 29.0
2588 Male, age 74, left hemisphere 27.3
1954 Female, age 42, unknown 26.2
2503 Female, age 72, unknown 25.9
2227 Male, age 72, unknown 25.8
2769 Male, age 72, unknown 25.5
1865 Male, age 51, unknown 25.3
1904 Male, age 53, unknown 23.8
2823 Male, age 76, right hemisphere 22.6
Substantia nigra
nTPM: 31.9
1916 Female, age 42, unknown 39.4
1941 Male, age 53, unknown 36.5
1889 Female, age 72, unknown 35.8
2665 Male, age 74, both hemispheres 35.1
1851 Male, age 51, unknown 32.6
2583 Male, age 75, right hemisphere 29.7
2241 Male, age 72, unknown 28.7
2409 Female, age 72, unknown 28.3
2590 Female, age 75, unknown 26.4
2699 Male, age 18, unknown 26.4
Superior colliculus
nTPM: 31.4
1796 Male, age 53, unknown 37.3
2261 Male, age 18, unknown 36.0
2087 Female, age 72, unknown 35.8
2664 Male, age 75, both hemispheres 34.6
1839 Male, age 51, unknown 33.6
1895 Male, age 76, right hemisphere 31.2
2668 Female, age 75, unknown 29.3
2587 Male, age 74, left hemisphere 29.1
1913 Female, age 42, unknown 24.7
1995 Male, age 72, unknown 22.0
Ventral tegmental area
nTPM: 32.6
1915 Female, age 42, unknown 36.0
2410 Female, age 72, unknown 33.8
2218 Male, age 76, both hemispheres 32.9
2021 Male, age 53, unknown 32.2
2223 Female, age 72, unknown 30.8
1942 Male, age 51, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 139

Max nTPM: 55.8
Min nTPM: 8.0
Std nTPM: 6.3
Median nTPM: 16.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 55.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 37.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 31.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 28.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 28.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 28.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 27.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 27.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 26.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 26.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.2
FF:10158-103A5 76 years, female 17.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.9
Samples: 4

Max nTPM: 9.5
Min nTPM: 3.5
Sample A Female 8.6
Sample B Female 5.9
Sample C Male 9.5
Sample D Male 3.5
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 12.5
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 5.6
Sample C Male 12.5
Sample D Male 9.8
Periaqueductal gray
nTPM: 6.3
Samples: 3

Max nTPM: 7.9
Min nTPM: 5.2
Sample B Female 5.2
Sample C Male 7.9
Sample D Male 5.7
Superior colliculi
nTPM: 10.7
Samples: 4

Max nTPM: 13.7
Min nTPM: 8.1
Sample A Female 13.7
Sample B Female 8.1
Sample C Male 10.4
Sample D Male 10.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.7
Samples: 4

Max nTPM: 46.5
Min nTPM: 39.6
Sample A Male 43.9
Sample B Male 44.6
Sample C Female 46.5
Sample D Female 39.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
71670700 Antisense, RP_050512_04_F05, Mouse strain C57BL/6J (56 days, male) 6.8
69981085 Antisense, RP_050512_04_F05, Mouse strain C57BL/6J (56 days, male) 5.7

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