HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:33.9 nTPM
HPA Brain:16.1 nTPM
GTEx:33.9 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:8.7 nTPM
Mouse:4.5 nTPM
Allen mouse:5.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038705Antibody HPA038706
Glial cells Not detectedNot detected
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Hippocampus
nTPM: 15.1
1898 Male, age 80, left hemisphere 20.0
2529 Female, age 94, left hemisphere 14.7
2148 Female, age 91, left hemisphere 14.5
1911 Female, age 85, right hemisphere 14.2
2621 Female, age 67, right hemisphere 13.6
1855 Male, age 76, left hemisphere 13.5
Dentate gyrus
nTPM: 15.1
2010 Male, age 76, both hemispheres 18.2
2530 Female, age 94, left hemisphere 17.9
2528 Male, age 74, both hemispheres 16.1
2531 Female, age 67, both hemispheres 13.1
1927 Female, age 91, both hemispheres 12.9
2246 Female, age 85, both hemispheres 12.7
Entorhinal gyrus
nTPM: 13.9
2117 Female, age 91, right hemisphere 15.7
2686 Male, age 75, right hemisphere 15.4
2764 Male, age 80, right hemisphere 14.4
1787 Male, age 76, left hemisphere 13.8
1938 Female, age 85, left hemisphere 13.0
2613 Female, age 94, left hemisphere 11.2
Hippocampus, CA1
nTPM: 13.7
2749 Male, age 80, left hemisphere 16.6
2527 Male, age 74, both hemispheres 14.8
1873 Female, age 85, both hemispheres 12.7
2082 Female, age 91, right hemisphere 12.7
2045 Male, age 76, both hemispheres 11.6
Hippocampus, CA2
nTPM: 16.1
1963 Male, age 80, left hemisphere 18.7
1892 Male, age 76, both hemispheres 18.2
2249 Male, age 74, both hemispheres 17.8
2437 Female, age 94, left hemisphere 16.6
2113 Female, age 91, right hemisphere 13.3
1940 Female, age 85, left hemisphere 12.1
Hippocampus, CA3
nTPM: 14.1
2436 Male, age 74, both hemispheres 16.8
1867 Male, age 76, both hemispheres 15.3
1891 Female, age 85, both hemispheres 14.7
2137 Male, age 80, left hemisphere 12.8
2861 Female, age 67, both hemispheres 12.6
2620 Female, age 94, left hemisphere 12.3
Parahippocampal cortex
nTPM: 12.1
2250 Female, age 67, right hemisphere 14.0
2018 Male, age 76, both hemispheres 13.8
1990 Female, age 91, right hemisphere 13.1
1850 Male, age 80, both hemispheres 12.6
2622 Female, age 67, right hemisphere 12.4
2245 Female, age 91, both hemispheres 11.9
2692 Male, age 74, both hemispheres 11.3
1933 Female, age 85, both hemispheres 11.2
2693 Female, age 94, both hemispheres 10.7
2532 Female, age 72, left hemisphere 10.2
Perirhinal gyrus
nTPM: 10.1
1847 Female, age 91, left hemisphere 12.2
1794 Male, age 80, right hemisphere 10.8
1841 Female, age 85, right hemisphere 10.7
2521 Female, age 94, right hemisphere 8.4
2848 Male, age 76, right hemisphere 8.2
Subiculum
nTPM: 14.2
1901 Male, age 80, both hemispheres 18.7
1977 Female, age 85, both hemispheres 15.3
2042 Male, age 76, both hemispheres 15.3
2619 Male, age 74, both hemispheres 15.1
2729 Female, age 91, right hemisphere 13.4
2438 Female, age 94, left hemisphere 7.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.9
Samples: 197

Max nTPM: 59.6
Min nTPM: 14.9
Std nTPM: 8.3
Median nTPM: 33.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 59.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 54.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 54.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 53.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 52.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 52.1
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 51.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 51.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 49.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 48.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 48.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 12.1
FF:10153-102I9 76 years, female 15.9
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.7
Pig sample Sample description nTPM
Subiculum
nTPM: 8.3
Samples: 4

Max nTPM: 11.8
Min nTPM: 6.9
Sample A Female 11.8
Sample B Female 6.9
Sample C Male 7.0
Sample D Male 7.5
Dorsal hippocampus
nTPM: 7.9
Samples: 4

Max nTPM: 10.0
Min nTPM: 6.1
Sample A Female 10.0
Sample B Female 6.1
Sample C Male 8.1
Sample D Male 7.3
Entorhinal cortex
nTPM: 8.7
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.9
Sample A Female 10.0
Sample B Female 7.9
Sample C Male 8.5
Sample D Male 8.4
Ventral hippocampus
nTPM: 7.7
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.5
Sample A Female 9.4
Sample B Female 7.2
Sample C Male 7.8
Sample D Male 6.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.7
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.2
Sample A Male 4.5
Sample B Male 3.3
Sample C Female 3.9
Sample D Female 3.2
Hippocampal formation
nTPM: 4.5
Samples: 4

Max nTPM: 5.7
Min nTPM: 3.6
Sample A Male 5.0
Sample B Male 3.6
Sample C Female 3.7
Sample D Female 5.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.3
68744725 Antisense, RP_050208_01_E04, Mouse strain C57BL/6J (56 days, male) 5.3

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