MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:172.6 nTPM
HPA Brain:510.3 nTPM
GTEx:172.6 nTPM
FANTOM5:625.8 Scaled Tags Per Million
Pig:130.1 nTPM
Mouse:91.2 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 510.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 344.9
1830 Male, age 51, unknown 470.4
2019 Male, age 18, unknown 455.1
1833 Male, age 53, unknown 435.0
2411 Female, age 72, unknown 409.1
1870 Female, age 42, unknown 399.3
2666 Male, age 74, left hemisphere 309.5
2828 Female, age 72, unknown 284.2
1827 Male, age 72, unknown 237.2
2219 Male, age 76, both hemispheres 224.6
2586 Male, age 75, left hemisphere 224.2
Dorsal raphe nucleus
nTPM: 246.8
2750 Male, age 76, both hemispheres 456.3
2016 Female, age 72, unknown 256.2
1828 Male, age 53, unknown 234.7
2047 Male, age 72, unknown 151.5
2298 Female, age 72, unknown 135.1
Inferior colliculus
nTPM: 231.1
1890 Male, age 53, unknown 247.5
1848 Female, age 42, unknown 239.4
2849 Male, age 72, unknown 238.6
2097 Female, age 72, unknown 199.0
Median raphe nucleus
nTPM: 211.8
2220 Male, age 76, midline 211.8
Periaquaductal grey, anterior
nTPM: 200.7
2502 Female, age 75, unknown 243.7
1947 Male, age 18, unknown 212.9
1795 Male, age 51, unknown 145.4
Periaquaductal grey, dorsal
nTPM: 162.2
2464 Female, age 72, unknown 264.8
1831 Male, age 72, unknown 172.4
2850 Male, age 76, both hemispheres 111.8
1840 Male, age 53, unknown 99.8
Periaquaductal grey, lateral
nTPM: 176.2
2272 Male, age 74, both hemispheres 220.3
2053 Male, age 18, unknown 197.0
2140 Male, age 76, both hemispheres 111.2
Pretectal area
nTPM: 232.2
2316 Male, age 76, right hemisphere 368.0
1815 Male, age 53, unknown 341.3
1817 Female, age 42, unknown 299.6
2007 Male, age 72, unknown 277.7
2407 Male, age 75, both hemispheres 218.1
2825 Male, age 18, unknown 217.9
2273 Male, age 74, both hemispheres 182.2
2224 Female, age 72, unknown 170.2
1944 Female, age 72, unknown 167.4
2667 Female, age 75, unknown 156.3
1816 Male, age 51, unknown 155.5
Red nucleus
nTPM: 510.3
1821 Female, age 72, unknown 681.1
1865 Male, age 51, unknown 672.4
2823 Male, age 76, right hemisphere 602.9
1904 Male, age 53, unknown 592.6
2503 Female, age 72, unknown 521.6
1954 Female, age 42, unknown 500.2
2785 Male, age 18, unknown 471.7
2227 Male, age 72, unknown 465.6
2769 Male, age 72, unknown 457.3
2588 Male, age 74, left hemisphere 434.7
2725 Female, age 75, unknown 430.2
2584 Male, age 75, left hemisphere 293.6
Substantia nigra
nTPM: 287.5
2409 Female, age 72, unknown 425.8
1889 Female, age 72, unknown 325.9
1851 Male, age 51, unknown 321.2
2590 Female, age 75, unknown 310.3
2241 Male, age 72, unknown 308.5
2699 Male, age 18, unknown 282.8
2583 Male, age 75, right hemisphere 257.5
1941 Male, age 53, unknown 236.9
2665 Male, age 74, both hemispheres 207.1
1916 Female, age 42, unknown 198.4
Superior colliculus
nTPM: 304.2
1895 Male, age 76, right hemisphere 500.5
1995 Male, age 72, unknown 415.9
1913 Female, age 42, unknown 412.5
2668 Female, age 75, unknown 337.8
2587 Male, age 74, left hemisphere 324.7
1839 Male, age 51, unknown 323.1
1796 Male, age 53, unknown 214.4
2087 Female, age 72, unknown 177.7
2261 Male, age 18, unknown 173.5
2664 Male, age 75, both hemispheres 161.9
Ventral tegmental area
nTPM: 293.1
2223 Female, age 72, unknown 407.0
2410 Female, age 72, unknown 388.0
2218 Male, age 76, both hemispheres 250.4
1915 Female, age 42, unknown 249.0
2021 Male, age 53, unknown 246.3
1942 Male, age 51, unknown 217.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 172.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 172.6
Samples: 139

Max nTPM: 450.7
Min nTPM: 64.6
Std nTPM: 80.7
Median nTPM: 148.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 450.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 418.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 412.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 373.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 373.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 369.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 368.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 342.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 332.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 331.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 317.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 625.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 625.8
FF:10158-103A5 76 years, female 625.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 130.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 103.7
Samples: 4

Max nTPM: 164.7
Min nTPM: 64.0
Sample A Female 106.1
Sample B Female 64.0
Sample C Male 80.1
Sample D Male 164.7
Midbrain
nTPM: 130.1
Samples: 4

Max nTPM: 271.9
Min nTPM: 68.3
Sample A Female 271.9
Sample B Female 109.4
Sample C Male 70.7
Sample D Male 68.3
Periaqueductal gray
nTPM: 73.5
Samples: 3

Max nTPM: 89.9
Min nTPM: 56.4
Sample B Female 89.9
Sample C Male 56.4
Sample D Male 74.2
Superior colliculi
nTPM: 90.9
Samples: 4

Max nTPM: 114.5
Min nTPM: 47.6
Sample A Female 100.2
Sample B Female 47.6
Sample C Male 101.1
Sample D Male 114.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.3
Samples: 4

Max nTPM: 94.1
Min nTPM: 87.3
Sample A Male 87.3
Sample B Male 90.7
Sample C Female 92.9
Sample D Female 94.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
75146004 Antisense, RP_060220_02_B10, Mouse strain C57BL/6J (56 days, male) 6.4
564654 Antisense, RP_040826_01_B12, Mouse strain C57BL/6J (56 days, male) 2.7

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