HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:13.2 nTPM
HPA Brain:62.8 nTPM
GTEx:13.2 nTPM
FANTOM5:40.1 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:44.5 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000556
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 62.8
Sample id Sample description nTPM
Hippocampus
nTPM: 53.1
2529 Female, age 94, left hemisphere 71.7
1911 Female, age 85, right hemisphere 55.8
2621 Female, age 67, right hemisphere 55.2
1855 Male, age 76, left hemisphere 47.1
1898 Male, age 80, left hemisphere 44.9
2148 Female, age 91, left hemisphere 43.9
Dentate gyrus
nTPM: 53.3
2530 Female, age 94, left hemisphere 65.1
2246 Female, age 85, both hemispheres 59.8
2531 Female, age 67, both hemispheres 55.8
1927 Female, age 91, both hemispheres 47.6
2528 Male, age 74, both hemispheres 46.5
2010 Male, age 76, both hemispheres 44.8
Entorhinal gyrus
nTPM: 55.3
2764 Male, age 80, right hemisphere 61.9
1938 Female, age 85, left hemisphere 60.4
1787 Male, age 76, left hemisphere 57.5
2686 Male, age 75, right hemisphere 56.7
2117 Female, age 91, right hemisphere 49.2
2613 Female, age 94, left hemisphere 46.4
Hippocampus, CA1
nTPM: 53.1
2527 Male, age 74, both hemispheres 66.5
2082 Female, age 91, right hemisphere 54.6
2749 Male, age 80, left hemisphere 52.0
1873 Female, age 85, both hemispheres 49.0
2045 Male, age 76, both hemispheres 43.6
Hippocampus, CA2
nTPM: 53.1
2249 Male, age 74, both hemispheres 61.1
2113 Female, age 91, right hemisphere 57.6
1963 Male, age 80, left hemisphere 56.8
1940 Female, age 85, left hemisphere 51.8
2437 Female, age 94, left hemisphere 51.3
1892 Male, age 76, both hemispheres 40.0
Hippocampus, CA3
nTPM: 59.2
2436 Male, age 74, both hemispheres 71.8
2861 Female, age 67, both hemispheres 67.2
2137 Male, age 80, left hemisphere 58.7
1867 Male, age 76, both hemispheres 55.1
2620 Female, age 94, left hemisphere 53.6
1891 Female, age 85, both hemispheres 49.2
Parahippocampal cortex
nTPM: 59.8
1933 Female, age 85, both hemispheres 73.7
2018 Male, age 76, both hemispheres 63.7
2532 Female, age 72, left hemisphere 63.6
1850 Male, age 80, both hemispheres 62.6
2622 Female, age 67, right hemisphere 59.8
2245 Female, age 91, both hemispheres 59.0
2250 Female, age 67, right hemisphere 59.0
1990 Female, age 91, right hemisphere 55.3
2693 Female, age 94, both hemispheres 52.1
2692 Male, age 74, both hemispheres 49.0
Perirhinal gyrus
nTPM: 62.8
1841 Female, age 85, right hemisphere 80.3
1794 Male, age 80, right hemisphere 64.6
1847 Female, age 91, left hemisphere 59.3
2848 Male, age 76, right hemisphere 56.3
2521 Female, age 94, right hemisphere 53.5
Subiculum
nTPM: 51.8
1977 Female, age 85, both hemispheres 61.8
2042 Male, age 76, both hemispheres 56.4
2619 Male, age 74, both hemispheres 50.9
2438 Female, age 94, left hemisphere 47.7
2729 Female, age 91, right hemisphere 47.2
1901 Male, age 80, both hemispheres 47.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.2
Samples: 197

Max nTPM: 38.6
Min nTPM: 4.7
Std nTPM: 5.2
Median nTPM: 12.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 38.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 26.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 26.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 25.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 25.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 25.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 24.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 24.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 23.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 23.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 23.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 40.1
FF:10153-102I9 76 years, female 41.9
FF:10169-103B7 60 years, female 38.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.7
Pig sample Sample description nTPM
Subiculum
nTPM: 27.8
Samples: 4

Max nTPM: 37.3
Min nTPM: 21.9
Sample A Female 27.5
Sample B Female 21.9
Sample C Male 37.3
Sample D Male 24.3
Dorsal hippocampus
nTPM: 21.8
Samples: 4

Max nTPM: 35.2
Min nTPM: 10.8
Sample A Female 21.4
Sample B Female 19.9
Sample C Male 35.2
Sample D Male 10.8
Entorhinal cortex
nTPM: 19.9
Samples: 4

Max nTPM: 24.2
Min nTPM: 16.5
Sample A Female 19.3
Sample B Female 19.6
Sample C Male 24.2
Sample D Male 16.5
Ventral hippocampus
nTPM: 25.2
Samples: 4

Max nTPM: 34.8
Min nTPM: 20.6
Sample A Female 20.6
Sample B Female 23.8
Sample C Male 34.8
Sample D Male 21.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 44.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.0
Samples: 4

Max nTPM: 44.4
Min nTPM: 26.6
Sample A Male 31.7
Sample B Male 26.6
Sample C Female 41.1
Sample D Female 44.4
Hippocampal formation
nTPM: 44.5
Samples: 4

Max nTPM: 49.8
Min nTPM: 39.0
Sample A Male 39.0
Sample B Male 49.8
Sample C Female 49.5
Sample D Female 39.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
69608052 Antisense, RP_050426_03_D07, Mouse strain C57BL/6J (56 days, male) 4.9
72283807 Antisense, RP_051027_01_C02, Mouse strain C57BL/6J (56 days, male) 1.0

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