MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.6 nTPM
HPA Brain:8.7 nTPM
GTEx:12.6 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:32.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.4
1870 Female, age 42, unknown 9.7
2411 Female, age 72, unknown 8.5
1833 Male, age 53, unknown 8.3
1827 Male, age 72, unknown 7.4
2828 Female, age 72, unknown 7.1
2019 Male, age 18, unknown 6.9
1830 Male, age 51, unknown 6.7
2219 Male, age 76, both hemispheres 6.7
2666 Male, age 74, left hemisphere 6.6
2586 Male, age 75, left hemisphere 6.0
Dorsal raphe nucleus
nTPM: 7.1
2750 Male, age 76, both hemispheres 8.5
1828 Male, age 53, unknown 7.3
2298 Female, age 72, unknown 7.3
2047 Male, age 72, unknown 6.9
2016 Female, age 72, unknown 5.6
Inferior colliculus
nTPM: 6.1
1848 Female, age 42, unknown 7.2
2849 Male, age 72, unknown 6.4
1890 Male, age 53, unknown 5.5
2097 Female, age 72, unknown 5.4
Median raphe nucleus
nTPM: 8.7
2220 Male, age 76, midline 8.7
Periaquaductal grey, anterior
nTPM: 7.8
1795 Male, age 51, unknown 8.5
2502 Female, age 75, unknown 8.4
1947 Male, age 18, unknown 6.5
Periaquaductal grey, dorsal
nTPM: 6.6
2850 Male, age 76, both hemispheres 7.9
1840 Male, age 53, unknown 6.8
2464 Female, age 72, unknown 6.4
1831 Male, age 72, unknown 5.1
Periaquaductal grey, lateral
nTPM: 6.5
2140 Male, age 76, both hemispheres 7.3
2053 Male, age 18, unknown 6.6
2272 Male, age 74, both hemispheres 5.7
Pretectal area
nTPM: 7.0
2224 Female, age 72, unknown 7.7
2825 Male, age 18, unknown 7.7
1817 Female, age 42, unknown 7.3
2273 Male, age 74, both hemispheres 7.2
2407 Male, age 75, both hemispheres 7.1
1815 Male, age 53, unknown 7.0
1816 Male, age 51, unknown 6.8
2667 Female, age 75, unknown 6.8
2007 Male, age 72, unknown 6.7
1944 Female, age 72, unknown 6.0
2316 Male, age 76, right hemisphere 6.0
Red nucleus
nTPM: 6.8
2227 Male, age 72, unknown 7.7
2785 Male, age 18, unknown 7.5
1904 Male, age 53, unknown 7.2
2503 Female, age 72, unknown 7.2
2584 Male, age 75, left hemisphere 7.0
2588 Male, age 74, left hemisphere 6.9
2823 Male, age 76, right hemisphere 6.8
1821 Female, age 72, unknown 6.5
1865 Male, age 51, unknown 6.5
2769 Male, age 72, unknown 6.1
2725 Female, age 75, unknown 6.0
1954 Female, age 42, unknown 5.6
Substantia nigra
nTPM: 7.6
2241 Male, age 72, unknown 11.9
1851 Male, age 51, unknown 8.7
1916 Female, age 42, unknown 8.7
2590 Female, age 75, unknown 8.0
1889 Female, age 72, unknown 7.6
1941 Male, age 53, unknown 6.9
2583 Male, age 75, right hemisphere 6.9
2699 Male, age 18, unknown 6.7
2409 Female, age 72, unknown 5.9
2665 Male, age 74, both hemispheres 5.1
Superior colliculus
nTPM: 7.2
2664 Male, age 75, both hemispheres 8.3
2587 Male, age 74, left hemisphere 8.2
2087 Female, age 72, unknown 8.0
2261 Male, age 18, unknown 7.9
1839 Male, age 51, unknown 7.2
1913 Female, age 42, unknown 7.1
1796 Male, age 53, unknown 7.0
2668 Female, age 75, unknown 7.0
1895 Male, age 76, right hemisphere 6.1
1995 Male, age 72, unknown 5.4
Ventral tegmental area
nTPM: 8.1
2218 Male, age 76, both hemispheres 9.7
1915 Female, age 42, unknown 8.5
2223 Female, age 72, unknown 8.3
2410 Female, age 72, unknown 7.6
2021 Male, age 53, unknown 7.5
1942 Male, age 51, unknown 7.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.6
Samples: 139

Max nTPM: 27.5
Min nTPM: 4.2
Std nTPM: 3.5
Median nTPM: 12.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 24.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 19.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 18.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 18.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 18.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 18.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 18.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 18.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 18.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.4
FF:10158-103A5 76 years, female 17.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.7
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.0
Sample A Female 11.3
Sample B Female 8.8
Sample C Male 10.5
Sample D Male 8.0
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 12.0
Min nTPM: 7.9
Sample A Female 12.0
Sample B Female 8.2
Sample C Male 12.0
Sample D Male 7.9
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 8.9
Min nTPM: 6.5
Sample B Female 8.1
Sample C Male 8.9
Sample D Male 6.5
Superior colliculi
nTPM: 10.8
Samples: 4

Max nTPM: 11.8
Min nTPM: 10.0
Sample A Female 11.2
Sample B Female 11.8
Sample C Male 10.0
Sample D Male 10.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 34.2
Min nTPM: 31.3
Sample A Male 34.2
Sample B Male 32.4
Sample C Female 31.3
Sample D Female 32.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68499207 Antisense, RP_050118_01_B05, Mouse strain C57BL/6J (56 days, male) 0.3

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