MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.5 nTPM
HPA Brain:30.3 nTPM
GTEx:50.5 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:83.2 nTPM
Mouse:77.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.2
2019 Male, age 18, unknown 32.9
2411 Female, age 72, unknown 32.3
1870 Female, age 42, unknown 30.4
1827 Male, age 72, unknown 28.5
1833 Male, age 53, unknown 25.8
1830 Male, age 51, unknown 25.1
2828 Female, age 72, unknown 23.2
2219 Male, age 76, both hemispheres 21.7
2666 Male, age 74, left hemisphere 21.1
2586 Male, age 75, left hemisphere 20.7
Dorsal raphe nucleus
nTPM: 27.2
2298 Female, age 72, unknown 32.3
2047 Male, age 72, unknown 27.9
1828 Male, age 53, unknown 26.8
2750 Male, age 76, both hemispheres 25.9
2016 Female, age 72, unknown 23.2
Inferior colliculus
nTPM: 28.6
2097 Female, age 72, unknown 31.0
1848 Female, age 42, unknown 29.2
2849 Male, age 72, unknown 28.5
1890 Male, age 53, unknown 25.6
Median raphe nucleus
nTPM: 28.2
2220 Male, age 76, midline 28.2
Periaquaductal grey, anterior
nTPM: 25.5
1947 Male, age 18, unknown 26.6
2502 Female, age 75, unknown 25.2
1795 Male, age 51, unknown 24.6
Periaquaductal grey, dorsal
nTPM: 27.2
1840 Male, age 53, unknown 28.8
2850 Male, age 76, both hemispheres 28.8
2464 Female, age 72, unknown 27.0
1831 Male, age 72, unknown 24.2
Periaquaductal grey, lateral
nTPM: 30.3
2272 Male, age 74, both hemispheres 38.0
2140 Male, age 76, both hemispheres 27.8
2053 Male, age 18, unknown 25.1
Pretectal area
nTPM: 30.1
2273 Male, age 74, both hemispheres 36.5
2007 Male, age 72, unknown 34.9
1817 Female, age 42, unknown 33.4
2224 Female, age 72, unknown 31.2
1816 Male, age 51, unknown 30.9
2667 Female, age 75, unknown 30.7
1944 Female, age 72, unknown 30.2
2825 Male, age 18, unknown 27.9
1815 Male, age 53, unknown 27.4
2407 Male, age 75, both hemispheres 24.6
2316 Male, age 76, right hemisphere 23.6
Red nucleus
nTPM: 26.1
1821 Female, age 72, unknown 30.6
2785 Male, age 18, unknown 28.7
2725 Female, age 75, unknown 27.8
2503 Female, age 72, unknown 27.1
2769 Male, age 72, unknown 26.9
2823 Male, age 76, right hemisphere 26.6
1954 Female, age 42, unknown 26.2
1865 Male, age 51, unknown 25.5
2588 Male, age 74, left hemisphere 24.4
2227 Male, age 72, unknown 24.3
1904 Male, age 53, unknown 23.2
2584 Male, age 75, left hemisphere 22.6
Substantia nigra
nTPM: 22.9
1889 Female, age 72, unknown 28.4
1941 Male, age 53, unknown 28.3
2409 Female, age 72, unknown 24.5
2665 Male, age 74, both hemispheres 23.5
1851 Male, age 51, unknown 22.6
2590 Female, age 75, unknown 21.2
2583 Male, age 75, right hemisphere 21.1
2241 Male, age 72, unknown 20.6
2699 Male, age 18, unknown 19.5
1916 Female, age 42, unknown 19.0
Superior colliculus
nTPM: 25.9
2587 Male, age 74, left hemisphere 29.2
1839 Male, age 51, unknown 27.6
1796 Male, age 53, unknown 27.4
2261 Male, age 18, unknown 25.9
1895 Male, age 76, right hemisphere 25.7
2668 Female, age 75, unknown 25.4
1995 Male, age 72, unknown 24.9
1913 Female, age 42, unknown 24.8
2087 Female, age 72, unknown 24.7
2664 Male, age 75, both hemispheres 23.0
Ventral tegmental area
nTPM: 23.9
2223 Female, age 72, unknown 28.8
2410 Female, age 72, unknown 24.1
1942 Male, age 51, unknown 23.6
2021 Male, age 53, unknown 23.3
1915 Female, age 42, unknown 22.1
2218 Male, age 76, both hemispheres 21.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.5
Samples: 139

Max nTPM: 99.9
Min nTPM: 33.9
Std nTPM: 11.4
Median nTPM: 48.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 99.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 94.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 87.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 80.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 77.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 76.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 72.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 71.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 71.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 68.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 68.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.7
Samples: 4

Max nTPM: 106.1
Min nTPM: 46.6
Sample A Female 106.1
Sample B Female 59.1
Sample C Male 83.1
Sample D Male 46.6
Midbrain
nTPM: 83.0
Samples: 4

Max nTPM: 87.9
Min nTPM: 78.0
Sample A Female 78.0
Sample B Female 87.9
Sample C Male 81.2
Sample D Male 84.8
Periaqueductal gray
nTPM: 83.2
Samples: 3

Max nTPM: 101.9
Min nTPM: 68.7
Sample B Female 79.0
Sample C Male 101.9
Sample D Male 68.7
Superior colliculi
nTPM: 79.7
Samples: 4

Max nTPM: 116.1
Min nTPM: 52.7
Sample A Female 116.1
Sample B Female 52.7
Sample C Male 73.2
Sample D Male 76.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.8
Samples: 4

Max nTPM: 80.2
Min nTPM: 73.9
Sample A Male 77.3
Sample B Male 80.2
Sample C Female 73.9
Sample D Female 79.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
67765703 Antisense, RP_040916_01_D06, Mouse strain C57BL/6J (56 days, male) 0.4

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