HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:18.2 nTPM
HPA Brain:39.4 nTPM
GTEx:18.2 nTPM
FANTOM5:109.0 Scaled Tags Per Million
Pig:87.0 nTPM
Mouse:624.0 nTPM
Allen mouse:22.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA071684
Glial cells Low
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.4
Sample id Sample description nTPM
Hippocampus
nTPM: 26.1
1898 Male, age 80, left hemisphere 34.5
2148 Female, age 91, left hemisphere 26.7
2621 Female, age 67, right hemisphere 25.7
1911 Female, age 85, right hemisphere 23.6
1855 Male, age 76, left hemisphere 23.0
2529 Female, age 94, left hemisphere 23.0
Dentate gyrus
nTPM: 30.0
1927 Female, age 91, both hemispheres 39.5
2528 Male, age 74, both hemispheres 30.5
2531 Female, age 67, both hemispheres 29.6
2530 Female, age 94, left hemisphere 28.9
2246 Female, age 85, both hemispheres 27.0
2010 Male, age 76, both hemispheres 24.3
Entorhinal gyrus
nTPM: 30.1
1938 Female, age 85, left hemisphere 36.7
2764 Male, age 80, right hemisphere 34.4
1787 Male, age 76, left hemisphere 31.8
2613 Female, age 94, left hemisphere 30.9
2686 Male, age 75, right hemisphere 24.9
2117 Female, age 91, right hemisphere 21.7
Hippocampus, CA1
nTPM: 32.1
2749 Male, age 80, left hemisphere 54.9
2527 Male, age 74, both hemispheres 28.8
1873 Female, age 85, both hemispheres 28.0
2045 Male, age 76, both hemispheres 25.8
2082 Female, age 91, right hemisphere 23.0
Hippocampus, CA2
nTPM: 29.4
1892 Male, age 76, both hemispheres 38.9
2437 Female, age 94, left hemisphere 31.1
1963 Male, age 80, left hemisphere 30.1
2249 Male, age 74, both hemispheres 29.3
1940 Female, age 85, left hemisphere 24.3
2113 Female, age 91, right hemisphere 22.8
Hippocampus, CA3
nTPM: 33.3
2137 Male, age 80, left hemisphere 48.0
2620 Female, age 94, left hemisphere 38.7
1867 Male, age 76, both hemispheres 32.9
2436 Male, age 74, both hemispheres 28.9
1891 Female, age 85, both hemispheres 26.0
2861 Female, age 67, both hemispheres 25.2
Parahippocampal cortex
nTPM: 30.9
1850 Male, age 80, both hemispheres 38.8
1990 Female, age 91, right hemisphere 35.6
2245 Female, age 91, both hemispheres 34.0
2693 Female, age 94, both hemispheres 34.0
2250 Female, age 67, right hemisphere 33.8
1933 Female, age 85, both hemispheres 31.5
2532 Female, age 72, left hemisphere 29.7
2692 Male, age 74, both hemispheres 24.8
2622 Female, age 67, right hemisphere 24.7
2018 Male, age 76, both hemispheres 22.6
Perirhinal gyrus
nTPM: 39.4
1847 Female, age 91, left hemisphere 44.8
1794 Male, age 80, right hemisphere 42.1
1841 Female, age 85, right hemisphere 39.7
2521 Female, age 94, right hemisphere 36.1
2848 Male, age 76, right hemisphere 34.1
Subiculum
nTPM: 26.1
1901 Male, age 80, both hemispheres 33.3
1977 Female, age 85, both hemispheres 32.5
2619 Male, age 74, both hemispheres 26.7
2438 Female, age 94, left hemisphere 23.0
2729 Female, age 91, right hemisphere 21.7
2042 Male, age 76, both hemispheres 19.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.2
Samples: 197

Max nTPM: 41.4
Min nTPM: 7.9
Std nTPM: 6.8
Median nTPM: 16.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 41.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 37.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 35.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 34.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 33.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 33.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 33.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 33.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 31.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 31.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 30.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 109.0
FF:10169-103B7 60 years, female 144.3
FF:10153-102I9 76 years, female 73.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 87.0
Pig sample Sample description nTPM
Subiculum
nTPM: 68.9
Samples: 4

Max nTPM: 95.9
Min nTPM: 53.1
Sample A Female 95.9
Sample B Female 65.0
Sample C Male 61.5
Sample D Male 53.1
Dorsal hippocampus
nTPM: 87.0
Samples: 4

Max nTPM: 118.5
Min nTPM: 60.0
Sample A Female 118.5
Sample B Female 78.2
Sample C Male 91.3
Sample D Male 60.0
Entorhinal cortex
nTPM: 76.1
Samples: 4

Max nTPM: 95.7
Min nTPM: 62.4
Sample A Female 70.9
Sample B Female 95.7
Sample C Male 75.2
Sample D Male 62.4
Ventral hippocampus
nTPM: 76.1
Samples: 4

Max nTPM: 90.7
Min nTPM: 52.2
Sample A Female 90.7
Sample B Female 52.2
Sample C Male 87.4
Sample D Male 74.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 624.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 582.2
Samples: 4

Max nTPM: 600.1
Min nTPM: 562.9
Sample A Male 562.9
Sample B Male 600.1
Sample C Female 599.2
Sample D Female 566.7
Hippocampal formation
nTPM: 624.1
Samples: 4

Max nTPM: 641.1
Min nTPM: 598.1
Sample A Male 641.1
Sample B Male 598.1
Sample C Female 622.6
Sample D Female 634.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 22.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 22.3
68797490 Antisense, RP_050125_02_C07, Mouse strain C57BL/6J (56 days, male) 22.3

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