MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:27.1 nTPM
GTEx:14.9 nTPM
FANTOM5:67.5 Scaled Tags Per Million
Pig:142.9 nTPM
Mouse:607.6 nTPM
Allen mouse:22.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.4
2219 Male, age 76, both hemispheres 25.7
2019 Male, age 18, unknown 25.3
2586 Male, age 75, left hemisphere 21.8
1827 Male, age 72, unknown 21.0
2411 Female, age 72, unknown 20.6
1833 Male, age 53, unknown 19.7
1870 Female, age 42, unknown 18.9
1830 Male, age 51, unknown 18.8
2828 Female, age 72, unknown 16.7
2666 Male, age 74, left hemisphere 15.8
Dorsal raphe nucleus
nTPM: 20.0
2298 Female, age 72, unknown 23.7
1828 Male, age 53, unknown 22.0
2047 Male, age 72, unknown 20.0
2016 Female, age 72, unknown 17.2
2750 Male, age 76, both hemispheres 17.1
Inferior colliculus
nTPM: 27.1
2097 Female, age 72, unknown 32.6
2849 Male, age 72, unknown 25.6
1848 Female, age 42, unknown 25.5
1890 Male, age 53, unknown 24.9
Median raphe nucleus
nTPM: 18.9
2220 Male, age 76, midline 18.9
Periaquaductal grey, anterior
nTPM: 21.1
2502 Female, age 75, unknown 24.8
1795 Male, age 51, unknown 19.4
1947 Male, age 18, unknown 19.0
Periaquaductal grey, dorsal
nTPM: 20.0
1840 Male, age 53, unknown 21.7
2464 Female, age 72, unknown 19.9
1831 Male, age 72, unknown 19.3
2850 Male, age 76, both hemispheres 19.1
Periaquaductal grey, lateral
nTPM: 19.0
2272 Male, age 74, both hemispheres 21.4
2140 Male, age 76, both hemispheres 17.9
2053 Male, age 18, unknown 17.8
Pretectal area
nTPM: 24.8
1817 Female, age 42, unknown 30.1
1944 Female, age 72, unknown 29.9
2007 Male, age 72, unknown 29.1
1816 Male, age 51, unknown 28.7
2273 Male, age 74, both hemispheres 26.8
2667 Female, age 75, unknown 24.2
1815 Male, age 53, unknown 22.8
2224 Female, age 72, unknown 22.1
2407 Male, age 75, both hemispheres 20.5
2825 Male, age 18, unknown 20.3
2316 Male, age 76, right hemisphere 18.7
Red nucleus
nTPM: 18.9
2785 Male, age 18, unknown 24.5
1821 Female, age 72, unknown 23.4
2725 Female, age 75, unknown 20.8
2584 Male, age 75, left hemisphere 19.7
2588 Male, age 74, left hemisphere 19.1
2227 Male, age 72, unknown 17.8
2769 Male, age 72, unknown 17.5
2503 Female, age 72, unknown 17.4
1954 Female, age 42, unknown 17.0
1865 Male, age 51, unknown 16.8
2823 Male, age 76, right hemisphere 16.7
1904 Male, age 53, unknown 16.1
Substantia nigra
nTPM: 21.0
2241 Male, age 72, unknown 27.2
1941 Male, age 53, unknown 26.4
1889 Female, age 72, unknown 26.2
1916 Female, age 42, unknown 23.3
1851 Male, age 51, unknown 20.6
2583 Male, age 75, right hemisphere 17.6
2590 Female, age 75, unknown 17.4
2665 Male, age 74, both hemispheres 17.3
2409 Female, age 72, unknown 17.2
2699 Male, age 18, unknown 16.8
Superior colliculus
nTPM: 21.6
1895 Male, age 76, right hemisphere 26.1
2087 Female, age 72, unknown 24.4
2664 Male, age 75, both hemispheres 24.2
1839 Male, age 51, unknown 23.9
2261 Male, age 18, unknown 22.4
2587 Male, age 74, left hemisphere 21.8
1796 Male, age 53, unknown 21.7
2668 Female, age 75, unknown 19.5
1995 Male, age 72, unknown 16.0
1913 Female, age 42, unknown 15.6
Ventral tegmental area
nTPM: 19.7
1915 Female, age 42, unknown 21.4
2218 Male, age 76, both hemispheres 21.3
2410 Female, age 72, unknown 20.9
1942 Male, age 51, unknown 19.3
2223 Female, age 72, unknown 18.1
2021 Male, age 53, unknown 17.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 139

Max nTPM: 45.4
Min nTPM: 7.3
Std nTPM: 5.2
Median nTPM: 13.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 36.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 26.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 25.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 25.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 25.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 24.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 23.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 23.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.5
FF:10158-103A5 76 years, female 67.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 142.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 105.0
Samples: 4

Max nTPM: 147.7
Min nTPM: 78.7
Sample A Female 147.7
Sample B Female 78.7
Sample C Male 109.2
Sample D Male 84.2
Midbrain
nTPM: 118.5
Samples: 4

Max nTPM: 132.2
Min nTPM: 104.9
Sample A Female 113.0
Sample B Female 104.9
Sample C Male 132.2
Sample D Male 124.0
Periaqueductal gray
nTPM: 84.1
Samples: 3

Max nTPM: 92.9
Min nTPM: 69.0
Sample B Female 92.9
Sample C Male 90.5
Sample D Male 69.0
Superior colliculi
nTPM: 142.9
Samples: 4

Max nTPM: 184.7
Min nTPM: 100.5
Sample A Female 172.4
Sample B Female 100.5
Sample C Male 184.7
Sample D Male 113.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 607.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 607.6
Samples: 4

Max nTPM: 651.1
Min nTPM: 568.1
Sample A Male 651.1
Sample B Male 600.6
Sample C Female 568.1
Sample D Female 610.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.9
68797490 Antisense, RP_050125_02_C07, Mouse strain C57BL/6J (56 days, male) 22.9

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