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SLC25A4
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  • SLC25A4
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:27.7 nTPM
FANTOM5:65.7 Scaled Tags Per Million
Pig:132.5 nTPM
Mouse:626.8 nTPM
Allen mouse:24.3 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 19.0
2032 Female, age 42, unknown 24.9
2497 Male, age 66, unknown 20.7
2396 Male, age 61, right hemisphere 11.5
Centromedial thalamic nucleus
nTPM: 20.6
2401 Male, age 76, right hemisphere 29.8
2279 Female, age 85, left hemisphere 11.4
Habenula
nTPM: 26.1
1957 Male, age 80, both hemispheres 30.3
2203 Male, age 61, left hemisphere 29.7
2276 Male, age 66, unknown 22.3
2252 Male, age 62, unknown 22.1
Lateral geniculate body
nTPM: 27.7
2106 Female, age 67, right hemisphere 48.3
1953 Male, age 62, unknown 32.7
2399 Male, age 61, left hemisphere 28.7
2035 Female, age 72, unknown 28.2
2857 Male, age 74, right hemisphere 25.4
2659 Male, age 66, unknown 19.5
2841 Male, age 80, both hemispheres 19.4
2575 Female, age 94, right hemisphere 19.2
Lateral thalamic nuclei
nTPM: 21.3
2765 Female, age 67, both hemispheres 28.1
1903 Male, age 76, left hemisphere 24.4
2573 Female, age 94, left hemisphere 20.7
2661 Female, age 72, unknown 17.2
2577 Male, age 74, both hemispheres 15.9
Medial dorsal thalamic nucleus
nTPM: 23.8
1859 Male, age 76, both hemispheres 29.0
2498 Male, age 66, unknown 28.1
1971 Male, age 61, right hemisphere 26.6
1810 Male, age 48, unknown 26.4
2283 Male, age 80, right hemisphere 26.4
2402 Female, age 67, both hemispheres 25.6
2026 Male, age 62, unknown 24.8
2492 Male, age 75, right hemisphere 23.2
2572 Female, age 94, right hemisphere 22.6
2576 Male, age 74, both hemispheres 21.4
1930 Female, age 42, unknown 20.4
2039 Female, age 72, unknown 19.7
2660 Female, age 72, unknown 15.8
Medial geniculate body
nTPM: 23.1
1811 Female, age 42, unknown 31.8
2650 Female, age 94, left hemisphere 24.5
2657 Male, age 74, right hemisphere 23.9
2207 Male, age 80, right hemisphere 21.7
2049 Male, age 76, both hemispheres 21.2
2571 Male, age 75, right hemisphere 21.0
2217 Female, age 72, unknown 17.7
Nucleus reuniens
nTPM: 19.4
2212 Female, age 67, left hemisphere 26.6
2205 Male, age 80, left hemisphere 19.9
2210 Female, age 85, left hemisphere 11.8
Nucleus rhomboideus
nTPM: 17.7
2206 Male, age 80, both hemispheres 27.0
2213 Female, age 67, left hemisphere 15.4
2280 Female, age 85, left hemisphere 10.7
Posterior thalamic nucleus
nTPM: 23.9
2266 Male, age 76, right hemisphere 25.4
2655 Male, age 74, right hemisphere 24.6
2495 Female, age 67, right hemisphere 22.9
2649 Female, age 94, both hemispheres 22.7
Pulvinar
nTPM: 25.1
1972 Male, age 62, unknown 29.7
2496 Female, age 67, right hemisphere 28.3
2398 Male, age 61, left hemisphere 27.2
1932 Male, age 80, right hemisphere 26.6
2724 Male, age 74, right hemisphere 25.8
2214 Male, age 76, right hemisphere 24.6
1899 Female, age 42, unknown 24.3
1929 Male, age 48, unknown 22.3
2499 Male, age 66, unknown 22.3
2582 Female, age 72, unknown 19.8
Subthalamic nucleus
nTPM: 19.6
2406 Female, age 72, unknown 23.4
2124 Male, age 62, unknown 21.0
2658 Male, age 74, both hemispheres 20.1
2275 Male, age 66, unknown 19.9
2282 Male, age 61, both hemispheres 19.8
2779 Female, age 42, unknown 19.5
2056 Female, age 72, unknown 17.9
2216 Male, age 48, unknown 15.2
Ventral posterolateral thalamic nucleus
nTPM: 22.3
2740 Male, age 76, right hemisphere 27.6
2197 Male, age 80, both hemispheres 26.7
2397 Male, age 61, right hemisphere 24.4
2570 Male, age 75, right hemisphere 23.1
2578 Male, age 74, both hemispheres 18.0
2581 Female, age 72, unknown 14.1
Ventral posteromedial thalamic nucleus
nTPM: 23.1
2202 Male, age 61, left hemisphere 31.1
2758 Male, age 80, both hemispheres 27.3
2281 Male, age 75, right hemisphere 22.9
2653 Male, age 74, both hemispheres 17.8
2127 Male, age 76, right hemisphere 16.4
Ventral thalamic nuclei
nTPM: 20.7
1860 Male, age 76, both hemispheres 27.9
1845 Male, age 48, unknown 25.9
2285 Male, age 62, unknown 22.4
1912 Female, age 42, unknown 22.0
2580 Male, age 66, unknown 20.4
2204 Male, age 80, both hemispheres 17.8
2291 Female, age 72, unknown 17.2
2858 Female, age 72, unknown 16.6
2652 Male, age 74, left hemisphere 16.1
Zona incerta
nTPM: 18.3
2215 Male, age 66, unknown 22.2
2208 Male, age 80, right hemisphere 20.4
2403 Male, age 62, unknown 17.4
2822 Male, age 74, right hemisphere 16.0
2663 Female, age 72, unknown 15.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 65.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 65.7
FF:10154-103A1 76 years, female 65.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 132.5
Pig sample Sample description nTPM
Thalamus
nTPM: 132.5
Samples: 4

Max nTPM: 169.5
Min nTPM: 101.9
Sample A Female 156.2
Sample B Female 101.9
Sample C Male 169.5
Sample D Male 102.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 626.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 626.8
Samples: 4

Max nTPM: 674.5
Min nTPM: 583.8
Sample A Male 674.5
Sample B Male 621.4
Sample C Female 627.3
Sample D Female 583.8

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 24.3
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 24.3
68797490 Antisense, RP_050125_02_C07, Mouse strain C57BL/6J (56 days, male) 24.3

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