HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.8 nTPM
HPA Brain:34.0 nTPM
GTEx:20.8 nTPM
FANTOM5:141.2 Scaled Tags Per Million
Pig:66.7 nTPM
Mouse:24.6 nTPM
Allen mouse:11.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.0
Sample id Sample description nTPM
Hippocampus
nTPM: 34.0
1911 Female, age 85, right hemisphere 39.4
1855 Male, age 76, left hemisphere 35.7
2529 Female, age 94, left hemisphere 35.4
1898 Male, age 80, left hemisphere 34.7
2621 Female, age 67, right hemisphere 29.5
2148 Female, age 91, left hemisphere 29.3
Dentate gyrus
nTPM: 30.8
2010 Male, age 76, both hemispheres 35.6
2246 Female, age 85, both hemispheres 33.6
1927 Female, age 91, both hemispheres 32.2
2528 Male, age 74, both hemispheres 30.9
2530 Female, age 94, left hemisphere 27.9
2531 Female, age 67, both hemispheres 24.9
Entorhinal gyrus
nTPM: 29.7
2117 Female, age 91, right hemisphere 34.5
1938 Female, age 85, left hemisphere 33.3
1787 Male, age 76, left hemisphere 29.7
2613 Female, age 94, left hemisphere 28.0
2686 Male, age 75, right hemisphere 26.8
2764 Male, age 80, right hemisphere 26.1
Hippocampus, CA1
nTPM: 33.8
1873 Female, age 85, both hemispheres 39.2
2749 Male, age 80, left hemisphere 34.4
2045 Male, age 76, both hemispheres 34.0
2527 Male, age 74, both hemispheres 33.1
2082 Female, age 91, right hemisphere 28.2
Hippocampus, CA2
nTPM: 33.4
2249 Male, age 74, both hemispheres 37.8
1940 Female, age 85, left hemisphere 35.7
1892 Male, age 76, both hemispheres 35.4
2437 Female, age 94, left hemisphere 31.9
2113 Female, age 91, right hemisphere 31.8
1963 Male, age 80, left hemisphere 27.6
Hippocampus, CA3
nTPM: 31.6
1891 Female, age 85, both hemispheres 38.7
2436 Male, age 74, both hemispheres 35.7
2137 Male, age 80, left hemisphere 34.9
1867 Male, age 76, both hemispheres 34.4
2620 Female, age 94, left hemisphere 25.6
2861 Female, age 67, both hemispheres 20.6
Parahippocampal cortex
nTPM: 32.7
1850 Male, age 80, both hemispheres 39.5
2250 Female, age 67, right hemisphere 37.0
1933 Female, age 85, both hemispheres 36.8
2245 Female, age 91, both hemispheres 34.2
2693 Female, age 94, both hemispheres 33.4
2018 Male, age 76, both hemispheres 30.6
2692 Male, age 74, both hemispheres 30.5
2532 Female, age 72, left hemisphere 30.4
1990 Female, age 91, right hemisphere 29.9
2622 Female, age 67, right hemisphere 24.3
Perirhinal gyrus
nTPM: 33.0
1841 Female, age 85, right hemisphere 38.0
2521 Female, age 94, right hemisphere 33.5
1794 Male, age 80, right hemisphere 32.4
2848 Male, age 76, right hemisphere 31.8
1847 Female, age 91, left hemisphere 29.1
Subiculum
nTPM: 31.9
1901 Male, age 80, both hemispheres 41.3
2042 Male, age 76, both hemispheres 36.8
1977 Female, age 85, both hemispheres 31.4
2729 Female, age 91, right hemisphere 30.8
2619 Male, age 74, both hemispheres 28.7
2438 Female, age 94, left hemisphere 22.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.8
Samples: 197

Max nTPM: 36.6
Min nTPM: 12.1
Std nTPM: 4.0
Median nTPM: 20.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 36.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 34.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 34.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 33.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 32.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 31.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 27.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 27.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 27.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 27.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 27.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 141.2
FF:10153-102I9 76 years, female 159.9
FF:10169-103B7 60 years, female 122.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 66.7
Pig sample Sample description nTPM
Subiculum
nTPM: 60.7
Samples: 4

Max nTPM: 63.1
Min nTPM: 57.1
Sample A Female 57.1
Sample B Female 60.4
Sample C Male 63.1
Sample D Male 62.3
Dorsal hippocampus
nTPM: 66.8
Samples: 4

Max nTPM: 71.2
Min nTPM: 64.5
Sample A Female 64.9
Sample B Female 66.4
Sample C Male 64.5
Sample D Male 71.2
Entorhinal cortex
nTPM: 58.2
Samples: 4

Max nTPM: 67.4
Min nTPM: 54.7
Sample A Female 55.5
Sample B Female 67.4
Sample C Male 54.7
Sample D Male 55.1
Ventral hippocampus
nTPM: 60.0
Samples: 4

Max nTPM: 66.8
Min nTPM: 51.7
Sample A Female 59.1
Sample B Female 62.4
Sample C Male 51.7
Sample D Male 66.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.6
Samples: 4

Max nTPM: 26.7
Min nTPM: 20.2
Sample A Male 20.5
Sample B Male 23.1
Sample C Female 26.7
Sample D Female 20.2
Hippocampal formation
nTPM: 24.6
Samples: 4

Max nTPM: 26.8
Min nTPM: 21.9
Sample A Male 25.4
Sample B Male 24.4
Sample C Female 21.9
Sample D Female 26.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.2
634440 Antisense, RP_040907_02_G11, Mouse strain C57BL/6J (56 days, male) 11.2

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