HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:5.1 nTPM
HPA Brain:12.4 nTPM
GTEx:5.1 nTPM
FANTOM5:22.3 Scaled Tags Per Million
Pig:8.3 nTPM
Mouse:8.2 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035726
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.4
Sample id Sample description nTPM
Hippocampus
nTPM: 11.7
1911 Female, age 85, right hemisphere 12.5
1855 Male, age 76, left hemisphere 12.1
2621 Female, age 67, right hemisphere 11.8
2529 Female, age 94, left hemisphere 11.6
1898 Male, age 80, left hemisphere 11.2
2148 Female, age 91, left hemisphere 11.0
Dentate gyrus
nTPM: 11.8
2010 Male, age 76, both hemispheres 12.7
2531 Female, age 67, both hemispheres 12.5
1927 Female, age 91, both hemispheres 12.1
2530 Female, age 94, left hemisphere 11.4
2246 Female, age 85, both hemispheres 11.2
2528 Male, age 74, both hemispheres 10.6
Entorhinal gyrus
nTPM: 10.8
1938 Female, age 85, left hemisphere 12.0
1787 Male, age 76, left hemisphere 11.5
2764 Male, age 80, right hemisphere 11.5
2613 Female, age 94, left hemisphere 10.2
2686 Male, age 75, right hemisphere 10.2
2117 Female, age 91, right hemisphere 9.6
Hippocampus, CA1
nTPM: 12.2
2045 Male, age 76, both hemispheres 15.4
2749 Male, age 80, left hemisphere 12.4
1873 Female, age 85, both hemispheres 11.3
2082 Female, age 91, right hemisphere 11.1
2527 Male, age 74, both hemispheres 11.0
Hippocampus, CA2
nTPM: 12.2
1940 Female, age 85, left hemisphere 13.6
2113 Female, age 91, right hemisphere 13.2
2249 Male, age 74, both hemispheres 12.9
1892 Male, age 76, both hemispheres 11.3
1963 Male, age 80, left hemisphere 11.0
2437 Female, age 94, left hemisphere 11.0
Hippocampus, CA3
nTPM: 11.6
2620 Female, age 94, left hemisphere 13.6
2436 Male, age 74, both hemispheres 12.4
2137 Male, age 80, left hemisphere 11.6
1891 Female, age 85, both hemispheres 11.5
2861 Female, age 67, both hemispheres 10.5
1867 Male, age 76, both hemispheres 10.1
Parahippocampal cortex
nTPM: 12.0
2018 Male, age 76, both hemispheres 12.8
2245 Female, age 91, both hemispheres 12.6
2250 Female, age 67, right hemisphere 12.6
2693 Female, age 94, both hemispheres 12.2
2532 Female, age 72, left hemisphere 11.9
1933 Female, age 85, both hemispheres 11.7
2622 Female, age 67, right hemisphere 11.7
2692 Male, age 74, both hemispheres 11.6
1990 Female, age 91, right hemisphere 11.3
1850 Male, age 80, both hemispheres 11.2
Perirhinal gyrus
nTPM: 11.9
2848 Male, age 76, right hemisphere 13.5
1841 Female, age 85, right hemisphere 13.0
1794 Male, age 80, right hemisphere 11.9
2521 Female, age 94, right hemisphere 10.8
1847 Female, age 91, left hemisphere 10.5
Subiculum
nTPM: 12.4
2438 Female, age 94, left hemisphere 15.0
2042 Male, age 76, both hemispheres 13.2
2729 Female, age 91, right hemisphere 12.1
1977 Female, age 85, both hemispheres 11.8
1901 Male, age 80, both hemispheres 11.1
2619 Male, age 74, both hemispheres 11.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 5.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 5.1
Samples: 197

Max nTPM: 9.8
Min nTPM: 2.2
Std nTPM: 1.2
Median nTPM: 5.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 9.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 8.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 8.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 7.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 7.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 7.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 7.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 7.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 7.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 7.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 7.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 22.3
FF:10169-103B7 60 years, female 25.9
FF:10153-102I9 76 years, female 18.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.3
Pig sample Sample description nTPM
Subiculum
nTPM: 7.1
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.5
Sample A Female 7.7
Sample B Female 7.4
Sample C Male 6.6
Sample D Male 6.5
Dorsal hippocampus
nTPM: 8.4
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.5
Sample A Female 8.4
Sample B Female 8.3
Sample C Male 7.5
Sample D Male 9.2
Entorhinal cortex
nTPM: 7.8
Samples: 4

Max nTPM: 8.2
Min nTPM: 7.5
Sample A Female 8.2
Sample B Female 7.9
Sample C Male 7.7
Sample D Male 7.5
Ventral hippocampus
nTPM: 8.0
Samples: 4

Max nTPM: 9.0
Min nTPM: 6.7
Sample A Female 9.0
Sample B Female 8.1
Sample C Male 6.7
Sample D Male 8.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 8.8
Min nTPM: 7.6
Sample A Male 8.5
Sample B Male 7.9
Sample C Female 8.8
Sample D Female 7.6
Hippocampal formation
nTPM: 7.5
Samples: 4

Max nTPM: 8.0
Min nTPM: 7.0
Sample A Male 7.7
Sample B Male 7.0
Sample C Female 8.0
Sample D Female 7.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
71764107 Antisense, RP_050921_03_C02, Mouse strain C57BL/6J (56 days, male) 0.0

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