MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:14.8 nTPM
GTEx:10.1 nTPM
FANTOM5:22.6 Scaled Tags Per Million
Pig:2.7 nTPM
Mouse:13.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.4
2019 Male, age 18, unknown 16.2
2219 Male, age 76, both hemispheres 14.7
1830 Male, age 51, unknown 14.1
1827 Male, age 72, unknown 13.5
1870 Female, age 42, unknown 13.5
2666 Male, age 74, left hemisphere 13.5
2828 Female, age 72, unknown 13.5
1833 Male, age 53, unknown 12.1
2411 Female, age 72, unknown 11.8
2586 Male, age 75, left hemisphere 10.9
Dorsal raphe nucleus
nTPM: 13.0
2298 Female, age 72, unknown 14.4
2750 Male, age 76, both hemispheres 13.4
2016 Female, age 72, unknown 12.7
2047 Male, age 72, unknown 12.6
1828 Male, age 53, unknown 11.8
Inferior colliculus
nTPM: 13.9
2097 Female, age 72, unknown 15.0
1848 Female, age 42, unknown 14.1
1890 Male, age 53, unknown 13.9
2849 Male, age 72, unknown 12.9
Median raphe nucleus
nTPM: 13.1
2220 Male, age 76, midline 13.1
Periaquaductal grey, anterior
nTPM: 13.4
1795 Male, age 51, unknown 14.6
1947 Male, age 18, unknown 14.0
2502 Female, age 75, unknown 11.8
Periaquaductal grey, dorsal
nTPM: 14.4
1840 Male, age 53, unknown 15.2
2850 Male, age 76, both hemispheres 15.0
2464 Female, age 72, unknown 14.1
1831 Male, age 72, unknown 13.1
Periaquaductal grey, lateral
nTPM: 14.8
2272 Male, age 74, both hemispheres 16.8
2140 Male, age 76, both hemispheres 14.2
2053 Male, age 18, unknown 13.3
Pretectal area
nTPM: 14.5
2273 Male, age 74, both hemispheres 18.7
1944 Female, age 72, unknown 16.0
1816 Male, age 51, unknown 15.0
2007 Male, age 72, unknown 14.8
2407 Male, age 75, both hemispheres 14.1
2667 Female, age 75, unknown 14.1
1815 Male, age 53, unknown 14.0
2224 Female, age 72, unknown 14.0
2825 Male, age 18, unknown 13.9
1817 Female, age 42, unknown 12.7
2316 Male, age 76, right hemisphere 12.0
Red nucleus
nTPM: 13.4
1954 Female, age 42, unknown 14.9
1904 Male, age 53, unknown 14.1
2823 Male, age 76, right hemisphere 14.1
2588 Male, age 74, left hemisphere 14.0
2769 Male, age 72, unknown 13.8
2785 Male, age 18, unknown 13.8
2584 Male, age 75, left hemisphere 13.6
1865 Male, age 51, unknown 13.2
2227 Male, age 72, unknown 13.2
1821 Female, age 72, unknown 12.9
2503 Female, age 72, unknown 11.9
2725 Female, age 75, unknown 11.0
Substantia nigra
nTPM: 13.4
2590 Female, age 75, unknown 18.5
1889 Female, age 72, unknown 13.6
1941 Male, age 53, unknown 13.6
2583 Male, age 75, right hemisphere 13.6
2241 Male, age 72, unknown 13.3
1916 Female, age 42, unknown 13.1
2409 Female, age 72, unknown 12.9
1851 Male, age 51, unknown 12.0
2699 Male, age 18, unknown 12.0
2665 Male, age 74, both hemispheres 11.6
Superior colliculus
nTPM: 13.8
1995 Male, age 72, unknown 15.8
2087 Female, age 72, unknown 15.5
1913 Female, age 42, unknown 14.5
2668 Female, age 75, unknown 13.8
1895 Male, age 76, right hemisphere 13.7
1796 Male, age 53, unknown 13.4
1839 Male, age 51, unknown 13.4
2261 Male, age 18, unknown 13.4
2587 Male, age 74, left hemisphere 12.9
2664 Male, age 75, both hemispheres 12.0
Ventral tegmental area
nTPM: 12.2
2021 Male, age 53, unknown 13.7
1915 Female, age 42, unknown 12.9
2218 Male, age 76, both hemispheres 12.6
1942 Male, age 51, unknown 11.6
2410 Female, age 72, unknown 11.3
2223 Female, age 72, unknown 11.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.1
Samples: 139

Max nTPM: 17.0
Min nTPM: 5.7
Std nTPM: 1.6
Median nTPM: 9.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 17.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 14.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 13.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 13.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 13.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 13.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 12.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 12.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 12.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.6
FF:10158-103A5 76 years, female 22.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.7
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 2.6
Sample C Male 3.0
Sample D Male 2.5
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.4
Sample A Female 2.6
Sample B Female 2.8
Sample C Male 2.4
Sample D Male 3.0
Periaqueductal gray
nTPM: 2.6
Samples: 3

Max nTPM: 2.9
Min nTPM: 2.3
Sample B Female 2.3
Sample C Male 2.9
Sample D Male 2.6
Superior colliculi
nTPM: 2.4
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.1
Sample A Female 2.5
Sample B Female 2.3
Sample C Male 2.1
Sample D Male 2.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 14.0
Min nTPM: 12.8
Sample A Male 13.6
Sample B Male 12.8
Sample C Female 14.0
Sample D Female 13.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68667793 Antisense, RP_050201_02_H02, Mouse strain C57BL/6J (56 days, male) 0.1

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