BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:85.8 nTPM
GTEx:24.3 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:27.6 nTPM
Mouse:23.7 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 85.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 48.4
2481 Female, age 94, left hemisphere 61.0
2290 Female, age 72, unknown 51.3
1854 Male, age 80, left hemisphere 50.7
1857 Female, age 85, left hemisphere 49.8
1781 Male, age 74, unknown 48.3
2289 Male, age 61, right hemisphere 45.1
2288 Male, age 75, left hemisphere 42.5
2846 Female, age 79, unknown 38.3
Globus pallidus, externus
nTPM: 62.5
2646 Male, age 61, right hemisphere 89.6
2567 Female, age 72, unknown 61.0
1996 Male, age 80, right hemisphere 58.2
2772 Female, age 79, unknown 53.6
2395 Male, age 75, both hemispheres 50.0
Globus pallidus, internus
nTPM: 49.8
2483 Female, age 94, right hemisphere 71.2
2037 Male, age 80, right hemisphere 54.9
1818 Male, age 74, unknown 53.3
2566 Female, age 72, unknown 50.7
2287 Male, age 75, right hemisphere 46.2
2111 Female, age 85, right hemisphere 36.9
2778 Female, age 91, both hemispheres 35.7
Nucleus accumbens
nTPM: 50.9
2824 Male, age 61, right hemisphere 59.7
1856 Female, age 91, right hemisphere 55.3
2698 Female, age 72, unknown 53.8
1806 Female, age 85, left hemisphere 50.2
1783 Male, age 74, unknown 49.0
2286 Male, age 75, left hemisphere 48.5
2391 Female, age 94, left hemisphere 47.1
2732 Male, age 80, right hemisphere 43.8
Nucleus basalis of Meynert
nTPM: 57.9
2569 Male, age 61, both hemispheres 97.6
2393 Male, age 80, right hemisphere 46.7
2484 Female, age 94, left hemisphere 46.3
2821 Male, age 75, both hemispheres 40.8
Nucleus of the diagonal band
nTPM: 85.8
2775 Male, age 80, right hemisphere 105.5
2195 Female, age 85, both hemispheres 98.1
1812 Female, age 91, both hemispheres 77.6
2029 Male, age 61, right hemisphere 77.3
1979 Male, age 74, unknown 70.6
Putamen
nTPM: 51.8
2647 Male, age 75, left hemisphere 72.3
2482 Female, age 94, left hemisphere 61.7
1838 Male, age 80, right hemisphere 49.8
2489 Female, age 72, unknown 48.8
1829 Male, age 74, unknown 46.5
1937 Female, age 91, right hemisphere 45.6
2466 Female, age 79, unknown 38.0
Septal nuclei
nTPM: 81.1
1960 Male, age 74, unknown 101.5
2059 Female, age 85, both hemispheres 96.1
2009 Female, age 91, both hemispheres 83.0
2199 Male, age 80, right hemisphere 76.9
2031 Female, age 72, unknown 74.0
2629 Female, age 94, right hemisphere 70.9
2394 Male, age 61, left hemisphere 65.2
Stria terminalis, bed nucleus
nTPM: 79.9
2201 Male, age 74, unknown 83.5
1974 Female, age 91, both hemispheres 83.2
2486 Female, age 94, both hemispheres 73.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.7
Samples: 246

Max nTPM: 43.5
Min nTPM: 8.7
Std nTPM: 5.7
Median nTPM: 20.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 43.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 40.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 40.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 36.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 36.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 36.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 34.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 33.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 33.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 32.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 32.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.3
Samples: 246

Max nTPM: 52.4
Min nTPM: 8.8
Std nTPM: 7.2
Median nTPM: 22.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 52.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 52.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 46.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 45.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 43.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 43.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 42.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 40.8
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 40.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 40.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 40.0
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Brain - Putamen (basal ganglia)
Average nTPM: 20.4
Samples: 205

Max nTPM: 41.3
Min nTPM: 6.8
Std nTPM: 5.8
Median nTPM: 19.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 41.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 38.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 37.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 36.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 35.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 35.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 32.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 32.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 31.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 31.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 31.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.0
FF:10164-103B2 76 years, female 55.0
Nucleus accumbens
Scaled Tags Per Million: 57.8
FF:10037-101F1 23-56 years, mixed 57.8
Putamen
Scaled Tags Per Million: 45.9
FF:10176-103C5 60 years, female 45.9
Globus pallidus
Scaled Tags Per Million: 55.1
FF:10175-103C4 60 years, female 67.4
FF:10161-103A8 76 years, female 42.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.6
Pig sample Sample description nTPM
Caudate
nTPM: 24.5
Samples: 4

Max nTPM: 26.2
Min nTPM: 23.5
Sample A Female 23.5
Sample B Female 24.0
Sample C Male 26.2
Sample D Male 24.1
Putamen
nTPM: 20.0
Samples: 4

Max nTPM: 24.0
Min nTPM: 17.5
Sample A Female 24.0
Sample B Female 17.5
Sample C Male 19.3
Sample D Male 19.0
Septum
nTPM: 27.6
Samples: 4

Max nTPM: 31.2
Min nTPM: 24.0
Sample A Female 25.2
Sample B Female 24.0
Sample C Male 31.2
Sample D Male 30.1
Ventral pallidum
nTPM: 24.0
Samples: 4

Max nTPM: 30.1
Min nTPM: 21.3
Sample A Female 22.8
Sample B Female 21.3
Sample C Male 30.1
Sample D Male 21.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.3
Samples: 4

Max nTPM: 18.2
Min nTPM: 12.9
Sample A Male 12.9
Sample B Male 13.2
Sample C Female 18.2
Sample D Female 16.9
Septum
nTPM: 23.8
Samples: 4

Max nTPM: 25.4
Min nTPM: 22.7
Sample A Male 22.7
Sample B Male 25.4
Sample C Female 23.2
Sample D Female 23.7
Ventral forebrain
nTPM: 21.0
Samples: 4

Max nTPM: 23.5
Min nTPM: 19.0
Sample A Male 20.9
Sample B Male 20.4
Sample C Female 19.0
Sample D Female 23.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
76003319 Antisense, RP_060608_02_A10, Mouse strain C57BL/6J (56 days, male) 0.5
70919519 Antisense, RP_050713_01_E05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.2
76003319 Antisense, RP_060608_02_A10, Mouse strain C57BL/6J (56 days, male) 0.5
70919519 Antisense, RP_050713_01_E05, Mouse strain C57BL/6J (56 days, male) 0.0

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