MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA Brain:22.6 nTPM
GTEx:7.5 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:30.5 nTPM
Mouse:29.1 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.2
2411 Female, age 72, unknown 26.5
2019 Male, age 18, unknown 26.4
2219 Male, age 76, both hemispheres 21.6
1830 Male, age 51, unknown 21.2
1870 Female, age 42, unknown 21.1
1827 Male, age 72, unknown 20.9
1833 Male, age 53, unknown 19.3
2828 Female, age 72, unknown 19.0
2666 Male, age 74, left hemisphere 18.6
2586 Male, age 75, left hemisphere 17.1
Dorsal raphe nucleus
nTPM: 22.1
2750 Male, age 76, both hemispheres 23.1
2298 Female, age 72, unknown 22.7
2047 Male, age 72, unknown 22.2
1828 Male, age 53, unknown 21.9
2016 Female, age 72, unknown 20.7
Inferior colliculus
nTPM: 21.2
1848 Female, age 42, unknown 22.1
2097 Female, age 72, unknown 21.7
1890 Male, age 53, unknown 21.1
2849 Male, age 72, unknown 19.9
Median raphe nucleus
nTPM: 20.5
2220 Male, age 76, midline 20.5
Periaquaductal grey, anterior
nTPM: 20.8
1947 Male, age 18, unknown 22.5
1795 Male, age 51, unknown 20.1
2502 Female, age 75, unknown 19.7
Periaquaductal grey, dorsal
nTPM: 20.7
2850 Male, age 76, both hemispheres 22.3
1840 Male, age 53, unknown 20.8
1831 Male, age 72, unknown 19.9
2464 Female, age 72, unknown 19.7
Periaquaductal grey, lateral
nTPM: 21.7
2140 Male, age 76, both hemispheres 22.7
2272 Male, age 74, both hemispheres 22.0
2053 Male, age 18, unknown 20.3
Pretectal area
nTPM: 22.0
2273 Male, age 74, both hemispheres 24.6
1817 Female, age 42, unknown 24.4
2007 Male, age 72, unknown 24.2
1944 Female, age 72, unknown 24.0
1816 Male, age 51, unknown 23.8
1815 Male, age 53, unknown 22.1
2224 Female, age 72, unknown 21.8
2667 Female, age 75, unknown 21.7
2825 Male, age 18, unknown 19.7
2407 Male, age 75, both hemispheres 18.0
2316 Male, age 76, right hemisphere 17.7
Red nucleus
nTPM: 22.6
1821 Female, age 72, unknown 26.4
2503 Female, age 72, unknown 24.8
2785 Male, age 18, unknown 23.7
1954 Female, age 42, unknown 23.4
2227 Male, age 72, unknown 22.9
1904 Male, age 53, unknown 22.7
1865 Male, age 51, unknown 22.1
2588 Male, age 74, left hemisphere 22.1
2725 Female, age 75, unknown 21.7
2823 Male, age 76, right hemisphere 21.5
2584 Male, age 75, left hemisphere 20.1
2769 Male, age 72, unknown 19.7
Substantia nigra
nTPM: 21.5
2590 Female, age 75, unknown 24.0
2409 Female, age 72, unknown 22.6
1916 Female, age 42, unknown 22.5
1941 Male, age 53, unknown 22.4
1851 Male, age 51, unknown 22.2
1889 Female, age 72, unknown 22.2
2241 Male, age 72, unknown 22.2
2583 Male, age 75, right hemisphere 20.6
2665 Male, age 74, both hemispheres 19.7
2699 Male, age 18, unknown 17.1
Superior colliculus
nTPM: 21.2
1895 Male, age 76, right hemisphere 23.3
1796 Male, age 53, unknown 23.0
1995 Male, age 72, unknown 22.9
2261 Male, age 18, unknown 21.8
2587 Male, age 74, left hemisphere 21.4
2087 Female, age 72, unknown 21.1
2668 Female, age 75, unknown 20.9
1913 Female, age 42, unknown 20.8
1839 Male, age 51, unknown 20.6
2664 Male, age 75, both hemispheres 16.5
Ventral tegmental area
nTPM: 21.4
2410 Female, age 72, unknown 23.9
2218 Male, age 76, both hemispheres 21.9
2223 Female, age 72, unknown 21.9
1942 Male, age 51, unknown 20.3
1915 Female, age 42, unknown 20.2
2021 Male, age 53, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.5
Samples: 139

Max nTPM: 15.6
Min nTPM: 2.2
Std nTPM: 1.9
Median nTPM: 7.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 13.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 12.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 12.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 11.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 10.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 10.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 10.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 10.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 10.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 10.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.6
FF:10158-103A5 76 years, female 47.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.7
Samples: 4

Max nTPM: 31.1
Min nTPM: 22.3
Sample A Female 31.1
Sample B Female 22.3
Sample C Male 26.6
Sample D Male 22.9
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 34.6
Min nTPM: 22.9
Sample A Female 29.8
Sample B Female 27.3
Sample C Male 34.6
Sample D Male 22.9
Periaqueductal gray
nTPM: 22.0
Samples: 3

Max nTPM: 23.2
Min nTPM: 19.7
Sample B Female 23.2
Sample C Male 23.1
Sample D Male 19.7
Superior colliculi
nTPM: 30.5
Samples: 4

Max nTPM: 34.5
Min nTPM: 26.7
Sample A Female 27.1
Sample B Female 33.6
Sample C Male 34.5
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 30.7
Min nTPM: 27.0
Sample A Male 27.0
Sample B Male 28.3
Sample C Female 30.3
Sample D Female 30.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
70218878 Antisense, RP_050524_01_D11, Mouse strain C57BL/6J (56 days, male) 2.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org