MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.9 nTPM
HPA Brain:55.5 nTPM
GTEx:50.9 nTPM
FANTOM5:87.6 Scaled Tags Per Million
Pig:61.1 nTPM
Mouse:16.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.3
2586 Male, age 75, left hemisphere 89.9
2828 Female, age 72, unknown 58.8
1870 Female, age 42, unknown 53.8
1833 Male, age 53, unknown 49.4
1827 Male, age 72, unknown 46.8
1830 Male, age 51, unknown 44.4
2019 Male, age 18, unknown 41.8
2666 Male, age 74, left hemisphere 41.0
2411 Female, age 72, unknown 38.5
2219 Male, age 76, both hemispheres 29.1
Dorsal raphe nucleus
nTPM: 41.7
1828 Male, age 53, unknown 51.4
2750 Male, age 76, both hemispheres 47.7
2016 Female, age 72, unknown 44.6
2298 Female, age 72, unknown 33.2
2047 Male, age 72, unknown 31.4
Inferior colliculus
nTPM: 38.2
2849 Male, age 72, unknown 41.5
1890 Male, age 53, unknown 39.4
1848 Female, age 42, unknown 37.8
2097 Female, age 72, unknown 34.1
Median raphe nucleus
nTPM: 42.5
2220 Male, age 76, midline 42.5
Periaquaductal grey, anterior
nTPM: 41.0
1795 Male, age 51, unknown 48.5
2502 Female, age 75, unknown 43.2
1947 Male, age 18, unknown 31.3
Periaquaductal grey, dorsal
nTPM: 48.2
2850 Male, age 76, both hemispheres 69.1
1831 Male, age 72, unknown 45.9
2464 Female, age 72, unknown 42.3
1840 Male, age 53, unknown 35.3
Periaquaductal grey, lateral
nTPM: 55.5
2140 Male, age 76, both hemispheres 81.2
2053 Male, age 18, unknown 50.3
2272 Male, age 74, both hemispheres 35.0
Pretectal area
nTPM: 47.3
2667 Female, age 75, unknown 57.3
1815 Male, age 53, unknown 56.1
1816 Male, age 51, unknown 52.0
2273 Male, age 74, both hemispheres 48.6
2316 Male, age 76, right hemisphere 47.5
2825 Male, age 18, unknown 47.4
1944 Female, age 72, unknown 46.7
1817 Female, age 42, unknown 45.2
2407 Male, age 75, both hemispheres 45.1
2007 Male, age 72, unknown 37.9
2224 Female, age 72, unknown 36.7
Red nucleus
nTPM: 54.0
2769 Male, age 72, unknown 65.3
2227 Male, age 72, unknown 63.2
1865 Male, age 51, unknown 61.3
1904 Male, age 53, unknown 59.4
2588 Male, age 74, left hemisphere 55.6
2503 Female, age 72, unknown 55.5
1954 Female, age 42, unknown 54.0
1821 Female, age 72, unknown 52.9
2823 Male, age 76, right hemisphere 48.9
2785 Male, age 18, unknown 47.6
2584 Male, age 75, left hemisphere 43.5
2725 Female, age 75, unknown 41.3
Substantia nigra
nTPM: 45.2
2699 Male, age 18, unknown 54.9
1851 Male, age 51, unknown 51.3
2583 Male, age 75, right hemisphere 50.3
1889 Female, age 72, unknown 50.0
1916 Female, age 42, unknown 46.5
2665 Male, age 74, both hemispheres 46.3
2409 Female, age 72, unknown 45.7
2590 Female, age 75, unknown 40.3
2241 Male, age 72, unknown 33.3
1941 Male, age 53, unknown 33.1
Superior colliculus
nTPM: 54.0
1995 Male, age 72, unknown 74.1
2261 Male, age 18, unknown 72.0
2664 Male, age 75, both hemispheres 61.9
1913 Female, age 42, unknown 58.5
2668 Female, age 75, unknown 57.5
2087 Female, age 72, unknown 51.4
1796 Male, age 53, unknown 50.5
2587 Male, age 74, left hemisphere 41.1
1839 Male, age 51, unknown 38.2
1895 Male, age 76, right hemisphere 35.1
Ventral tegmental area
nTPM: 45.1
2223 Female, age 72, unknown 56.1
2021 Male, age 53, unknown 45.9
2410 Female, age 72, unknown 45.5
2218 Male, age 76, both hemispheres 43.6
1915 Female, age 42, unknown 42.1
1942 Male, age 51, unknown 37.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.9
Samples: 139

Max nTPM: 155.2
Min nTPM: 5.6
Std nTPM: 21.2
Median nTPM: 48.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 155.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 133.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 119.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 104.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 102.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 87.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 87.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 83.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 83.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 78.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 78.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.6
FF:10158-103A5 76 years, female 87.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.1
Samples: 4

Max nTPM: 74.3
Min nTPM: 47.5
Sample A Female 55.5
Sample B Female 67.1
Sample C Male 47.5
Sample D Male 74.3
Midbrain
nTPM: 53.8
Samples: 4

Max nTPM: 97.9
Min nTPM: 35.7
Sample A Female 97.9
Sample B Female 42.2
Sample C Male 39.2
Sample D Male 35.7
Periaqueductal gray
nTPM: 41.5
Samples: 3

Max nTPM: 44.0
Min nTPM: 38.0
Sample B Female 44.0
Sample C Male 42.4
Sample D Male 38.0
Superior colliculi
nTPM: 40.0
Samples: 4

Max nTPM: 52.0
Min nTPM: 23.8
Sample A Female 52.0
Sample B Female 23.8
Sample C Male 41.0
Sample D Male 43.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 17.6
Min nTPM: 15.3
Sample A Male 17.6
Sample B Male 16.2
Sample C Female 15.3
Sample D Female 17.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69736112 Antisense, RP_050503_04_C01, Mouse strain C57BL/6J (56 days, male) 0.3

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