HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.2 nTPM
HPA Brain:14.0 nTPM
GTEx:12.2 nTPM
FANTOM5:3.9 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:8.6 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049367
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.0
Sample id Sample description nTPM
Hippocampus
nTPM: 12.5
1911 Female, age 85, right hemisphere 18.5
2621 Female, age 67, right hemisphere 14.3
2148 Female, age 91, left hemisphere 14.2
1855 Male, age 76, left hemisphere 10.0
2529 Female, age 94, left hemisphere 9.1
1898 Male, age 80, left hemisphere 8.9
Dentate gyrus
nTPM: 11.5
1927 Female, age 91, both hemispheres 17.7
2010 Male, age 76, both hemispheres 16.4
2530 Female, age 94, left hemisphere 13.2
2246 Female, age 85, both hemispheres 8.8
2528 Male, age 74, both hemispheres 7.2
2531 Female, age 67, both hemispheres 6.1
Entorhinal gyrus
nTPM: 5.8
2686 Male, age 75, right hemisphere 7.7
1938 Female, age 85, left hemisphere 7.2
2117 Female, age 91, right hemisphere 6.8
2613 Female, age 94, left hemisphere 5.1
2764 Male, age 80, right hemisphere 4.5
1787 Male, age 76, left hemisphere 3.6
Hippocampus, CA1
nTPM: 14.0
2749 Male, age 80, left hemisphere 29.7
1873 Female, age 85, both hemispheres 14.8
2527 Male, age 74, both hemispheres 12.6
2045 Male, age 76, both hemispheres 7.0
2082 Female, age 91, right hemisphere 6.1
Hippocampus, CA2
nTPM: 11.8
1963 Male, age 80, left hemisphere 21.7
1892 Male, age 76, both hemispheres 15.1
2249 Male, age 74, both hemispheres 12.1
2113 Female, age 91, right hemisphere 8.5
1940 Female, age 85, left hemisphere 6.9
2437 Female, age 94, left hemisphere 6.5
Hippocampus, CA3
nTPM: 10.9
2137 Male, age 80, left hemisphere 18.0
1867 Male, age 76, both hemispheres 12.1
1891 Female, age 85, both hemispheres 10.4
2861 Female, age 67, both hemispheres 10.3
2436 Male, age 74, both hemispheres 8.8
2620 Female, age 94, left hemisphere 5.9
Parahippocampal cortex
nTPM: 5.5
2245 Female, age 91, both hemispheres 9.9
2692 Male, age 74, both hemispheres 8.2
2018 Male, age 76, both hemispheres 6.5
2250 Female, age 67, right hemisphere 5.5
1990 Female, age 91, right hemisphere 5.1
2622 Female, age 67, right hemisphere 4.9
1933 Female, age 85, both hemispheres 4.8
2532 Female, age 72, left hemisphere 4.7
1850 Male, age 80, both hemispheres 3.4
2693 Female, age 94, both hemispheres 2.2
Perirhinal gyrus
nTPM: 4.0
1847 Female, age 91, left hemisphere 5.3
1841 Female, age 85, right hemisphere 4.5
1794 Male, age 80, right hemisphere 3.7
2521 Female, age 94, right hemisphere 3.7
2848 Male, age 76, right hemisphere 2.6
Subiculum
nTPM: 8.7
2042 Male, age 76, both hemispheres 12.8
2729 Female, age 91, right hemisphere 9.0
2438 Female, age 94, left hemisphere 8.6
1901 Male, age 80, both hemispheres 8.4
2619 Male, age 74, both hemispheres 8.3
1977 Female, age 85, both hemispheres 5.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.2
Samples: 197

Max nTPM: 50.3
Min nTPM: 1.4
Std nTPM: 8.3
Median nTPM: 10.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 50.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 43.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 37.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 35.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 32.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 31.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 31.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 29.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 29.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 29.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 29.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 3.9
FF:10169-103B7 60 years, female 5.1
FF:10153-102I9 76 years, female 2.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Subiculum
nTPM: 10.1
Samples: 4

Max nTPM: 15.6
Min nTPM: 6.6
Sample A Female 15.6
Sample B Female 6.6
Sample C Male 8.6
Sample D Male 9.6
Dorsal hippocampus
nTPM: 11.0
Samples: 4

Max nTPM: 13.3
Min nTPM: 7.1
Sample A Female 13.3
Sample B Female 7.1
Sample C Male 13.1
Sample D Male 10.6
Entorhinal cortex
nTPM: 12.3
Samples: 4

Max nTPM: 17.5
Min nTPM: 9.1
Sample A Female 10.1
Sample B Female 12.6
Sample C Male 17.5
Sample D Male 9.1
Ventral hippocampus
nTPM: 10.9
Samples: 4

Max nTPM: 14.6
Min nTPM: 6.6
Sample A Female 12.7
Sample B Female 6.6
Sample C Male 14.6
Sample D Male 9.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.6
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.1
Sample A Male 9.8
Sample B Male 7.1
Sample C Female 8.5
Sample D Female 9.1
Hippocampal formation
nTPM: 7.8
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.3
Sample A Male 7.6
Sample B Male 7.3
Sample C Female 7.3
Sample D Female 8.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
68522472 Antisense, RP_050118_02_B04, Mouse strain C57BL/6J (56 days, male) 0.4

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