HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:14.7 nTPM
HPA Brain:10.5 nTPM
GTEx:14.7 nTPM
FANTOM5:15.3 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:8.7 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027500
Glial cells Medium
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.5
Sample id Sample description nTPM
Hippocampus
nTPM: 9.7
1898 Male, age 80, left hemisphere 10.9
2148 Female, age 91, left hemisphere 9.9
2621 Female, age 67, right hemisphere 9.9
1855 Male, age 76, left hemisphere 9.4
2529 Female, age 94, left hemisphere 9.0
1911 Female, age 85, right hemisphere 8.8
Dentate gyrus
nTPM: 10.1
2530 Female, age 94, left hemisphere 13.0
2010 Male, age 76, both hemispheres 11.5
2528 Male, age 74, both hemispheres 9.9
2531 Female, age 67, both hemispheres 8.9
2246 Female, age 85, both hemispheres 8.7
1927 Female, age 91, both hemispheres 8.5
Entorhinal gyrus
nTPM: 10.3
2117 Female, age 91, right hemisphere 14.4
2764 Male, age 80, right hemisphere 10.6
1938 Female, age 85, left hemisphere 9.6
1787 Male, age 76, left hemisphere 9.3
2686 Male, age 75, right hemisphere 9.3
2613 Female, age 94, left hemisphere 8.8
Hippocampus, CA1
nTPM: 9.1
2082 Female, age 91, right hemisphere 9.5
1873 Female, age 85, both hemispheres 9.3
2527 Male, age 74, both hemispheres 9.3
2045 Male, age 76, both hemispheres 9.0
2749 Male, age 80, left hemisphere 8.6
Hippocampus, CA2
nTPM: 10.1
1940 Female, age 85, left hemisphere 11.8
1963 Male, age 80, left hemisphere 11.1
2249 Male, age 74, both hemispheres 11.1
2113 Female, age 91, right hemisphere 9.7
1892 Male, age 76, both hemispheres 8.9
2437 Female, age 94, left hemisphere 8.0
Hippocampus, CA3
nTPM: 9.2
1891 Female, age 85, both hemispheres 10.9
1867 Male, age 76, both hemispheres 9.9
2620 Female, age 94, left hemisphere 8.9
2436 Male, age 74, both hemispheres 8.7
2861 Female, age 67, both hemispheres 8.5
2137 Male, age 80, left hemisphere 8.1
Parahippocampal cortex
nTPM: 9.3
2532 Female, age 72, left hemisphere 11.2
2692 Male, age 74, both hemispheres 10.9
2018 Male, age 76, both hemispheres 9.9
1990 Female, age 91, right hemisphere 9.7
1933 Female, age 85, both hemispheres 9.2
2622 Female, age 67, right hemisphere 8.9
1850 Male, age 80, both hemispheres 8.8
2250 Female, age 67, right hemisphere 8.5
2693 Female, age 94, both hemispheres 8.1
2245 Female, age 91, both hemispheres 7.8
Perirhinal gyrus
nTPM: 8.1
1794 Male, age 80, right hemisphere 8.7
2848 Male, age 76, right hemisphere 8.7
1847 Female, age 91, left hemisphere 8.1
1841 Female, age 85, right hemisphere 7.9
2521 Female, age 94, right hemisphere 7.3
Subiculum
nTPM: 10.5
2042 Male, age 76, both hemispheres 11.6
1901 Male, age 80, both hemispheres 11.1
2619 Male, age 74, both hemispheres 10.6
1977 Female, age 85, both hemispheres 10.4
2438 Female, age 94, left hemisphere 10.1
2729 Female, age 91, right hemisphere 9.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.7
Samples: 197

Max nTPM: 42.0
Min nTPM: 7.0
Std nTPM: 4.7
Median nTPM: 13.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 42.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 31.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 31.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 26.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 25.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 25.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 25.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 24.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 24.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 23.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 23.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.3
FF:10169-103B7 60 years, female 16.6
FF:10153-102I9 76 years, female 14.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.7
Pig sample Sample description nTPM
Subiculum
nTPM: 13.1
Samples: 4

Max nTPM: 13.6
Min nTPM: 12.8
Sample A Female 12.9
Sample B Female 13.6
Sample C Male 13.1
Sample D Male 12.8
Dorsal hippocampus
nTPM: 16.7
Samples: 4

Max nTPM: 19.2
Min nTPM: 13.0
Sample A Female 19.2
Sample B Female 15.3
Sample C Male 19.1
Sample D Male 13.0
Entorhinal cortex
nTPM: 12.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.4
Sample A Female 11.4
Sample B Female 13.4
Sample C Male 12.7
Sample D Male 12.3
Ventral hippocampus
nTPM: 14.8
Samples: 4

Max nTPM: 16.7
Min nTPM: 11.5
Sample A Female 14.6
Sample B Female 11.5
Sample C Male 16.3
Sample D Male 16.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.6
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.4
Sample A Male 9.4
Sample B Male 7.1
Sample C Female 7.6
Sample D Female 6.4
Hippocampal formation
nTPM: 8.7
Samples: 4

Max nTPM: 8.9
Min nTPM: 8.4
Sample A Male 8.9
Sample B Male 8.9
Sample C Female 8.5
Sample D Female 8.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
70717980 Antisense, RP_050419_03_B11, Mouse strain C57BL/6J (56 days, male) 0.6

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