MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:263.0 nTPM
HPA Brain:84.6 nTPM
GTEx:263.0 nTPM
FANTOM5:229.5 Scaled Tags Per Million
Pig:61.3 nTPM
Mouse:367.1 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.2
2019 Male, age 18, unknown 88.6
1870 Female, age 42, unknown 81.6
2219 Male, age 76, both hemispheres 79.6
2411 Female, age 72, unknown 68.7
2666 Male, age 74, left hemisphere 63.6
1833 Male, age 53, unknown 61.8
1827 Male, age 72, unknown 58.5
1830 Male, age 51, unknown 57.3
2828 Female, age 72, unknown 54.3
2586 Male, age 75, left hemisphere 48.5
Dorsal raphe nucleus
nTPM: 69.9
2298 Female, age 72, unknown 78.3
1828 Male, age 53, unknown 76.2
2750 Male, age 76, both hemispheres 74.2
2047 Male, age 72, unknown 61.7
2016 Female, age 72, unknown 59.0
Inferior colliculus
nTPM: 84.6
2097 Female, age 72, unknown 93.9
1890 Male, age 53, unknown 91.8
1848 Female, age 42, unknown 78.0
2849 Male, age 72, unknown 74.5
Median raphe nucleus
nTPM: 81.9
2220 Male, age 76, midline 81.9
Periaquaductal grey, anterior
nTPM: 68.2
2502 Female, age 75, unknown 74.2
1947 Male, age 18, unknown 68.7
1795 Male, age 51, unknown 61.6
Periaquaductal grey, dorsal
nTPM: 61.8
2850 Male, age 76, both hemispheres 71.7
1840 Male, age 53, unknown 65.8
2464 Female, age 72, unknown 55.8
1831 Male, age 72, unknown 54.0
Periaquaductal grey, lateral
nTPM: 64.1
2272 Male, age 74, both hemispheres 70.5
2140 Male, age 76, both hemispheres 65.2
2053 Male, age 18, unknown 56.5
Pretectal area
nTPM: 79.4
1816 Male, age 51, unknown 98.6
1817 Female, age 42, unknown 98.5
1944 Female, age 72, unknown 98.0
2007 Male, age 72, unknown 95.6
2667 Female, age 75, unknown 82.5
2224 Female, age 72, unknown 78.7
1815 Male, age 53, unknown 76.7
2273 Male, age 74, both hemispheres 76.0
2316 Male, age 76, right hemisphere 60.7
2825 Male, age 18, unknown 59.7
2407 Male, age 75, both hemispheres 48.8
Red nucleus
nTPM: 74.3
1821 Female, age 72, unknown 93.5
2503 Female, age 72, unknown 86.1
1865 Male, age 51, unknown 83.7
2785 Male, age 18, unknown 81.3
2725 Female, age 75, unknown 80.6
2227 Male, age 72, unknown 77.0
1954 Female, age 42, unknown 75.7
2823 Male, age 76, right hemisphere 74.5
2769 Male, age 72, unknown 71.2
1904 Male, age 53, unknown 67.8
2584 Male, age 75, left hemisphere 50.7
2588 Male, age 74, left hemisphere 49.7
Substantia nigra
nTPM: 81.2
2241 Male, age 72, unknown 122.3
1916 Female, age 42, unknown 102.7
1889 Female, age 72, unknown 99.2
1941 Male, age 53, unknown 87.8
1851 Male, age 51, unknown 85.8
2409 Female, age 72, unknown 71.2
2665 Male, age 74, both hemispheres 69.5
2699 Male, age 18, unknown 67.6
2590 Female, age 75, unknown 56.9
2583 Male, age 75, right hemisphere 48.6
Superior colliculus
nTPM: 68.8
1895 Male, age 76, right hemisphere 82.0
2087 Female, age 72, unknown 80.6
2261 Male, age 18, unknown 75.7
2668 Female, age 75, unknown 73.2
1796 Male, age 53, unknown 71.4
1913 Female, age 42, unknown 69.6
2587 Male, age 74, left hemisphere 68.8
1839 Male, age 51, unknown 62.1
1995 Male, age 72, unknown 55.4
2664 Male, age 75, both hemispheres 49.3
Ventral tegmental area
nTPM: 77.7
2218 Male, age 76, both hemispheres 95.7
2223 Female, age 72, unknown 83.7
1915 Female, age 42, unknown 82.4
2410 Female, age 72, unknown 80.0
1942 Male, age 51, unknown 66.1
2021 Male, age 53, unknown 58.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 263.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 263.0
Samples: 139

Max nTPM: 547.1
Min nTPM: 157.1
Std nTPM: 60.3
Median nTPM: 252.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 547.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 460.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 418.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 392.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 384.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 377.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 370.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 369.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 368.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 365.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 361.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 229.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 229.5
FF:10158-103A5 76 years, female 229.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.1
Samples: 4

Max nTPM: 64.4
Min nTPM: 36.0
Sample A Female 64.4
Sample B Female 41.6
Sample C Male 42.5
Sample D Male 36.0
Midbrain
nTPM: 53.3
Samples: 4

Max nTPM: 58.7
Min nTPM: 49.9
Sample A Female 58.7
Sample B Female 51.4
Sample C Male 53.1
Sample D Male 49.9
Periaqueductal gray
nTPM: 44.0
Samples: 3

Max nTPM: 46.1
Min nTPM: 40.0
Sample B Female 46.1
Sample C Male 46.0
Sample D Male 40.0
Superior colliculi
nTPM: 61.3
Samples: 4

Max nTPM: 72.0
Min nTPM: 54.0
Sample A Female 72.0
Sample B Female 56.5
Sample C Male 62.8
Sample D Male 54.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 367.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 367.1
Samples: 4

Max nTPM: 397.2
Min nTPM: 338.6
Sample A Male 397.2
Sample B Male 370.3
Sample C Female 338.6
Sample D Female 362.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
124 Antisense, RP_Baylor_102641, Mouse strain C57BL/6J (56 days, male) 0.5
125 Antisense, RP_Baylor_102641, Mouse strain C57BL/6J (56 days, male) 0.2

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