MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.8 nTPM
HPA Brain:25.8 nTPM
GTEx:26.8 nTPM
FANTOM5:42.0 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:1.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2019 Male, age 18, unknown 28.5
2586 Male, age 75, left hemisphere 27.9
2828 Female, age 72, unknown 26.2
2666 Male, age 74, left hemisphere 25.6
2411 Female, age 72, unknown 25.3
1827 Male, age 72, unknown 24.9
1830 Male, age 51, unknown 24.3
2219 Male, age 76, both hemispheres 23.0
1833 Male, age 53, unknown 21.9
1870 Female, age 42, unknown 21.7
Dorsal raphe nucleus
nTPM: 22.2
2298 Female, age 72, unknown 25.8
2750 Male, age 76, both hemispheres 23.2
2047 Male, age 72, unknown 22.4
2016 Female, age 72, unknown 19.9
1828 Male, age 53, unknown 19.7
Inferior colliculus
nTPM: 19.5
1890 Male, age 53, unknown 20.5
2097 Female, age 72, unknown 20.2
1848 Female, age 42, unknown 18.9
2849 Male, age 72, unknown 18.6
Median raphe nucleus
nTPM: 20.5
2220 Male, age 76, midline 20.5
Periaquaductal grey, anterior
nTPM: 25.8
2502 Female, age 75, unknown 27.6
1795 Male, age 51, unknown 26.0
1947 Male, age 18, unknown 23.8
Periaquaductal grey, dorsal
nTPM: 19.5
2464 Female, age 72, unknown 21.3
1840 Male, age 53, unknown 20.0
2850 Male, age 76, both hemispheres 18.6
1831 Male, age 72, unknown 18.3
Periaquaductal grey, lateral
nTPM: 23.5
2272 Male, age 74, both hemispheres 24.0
2053 Male, age 18, unknown 23.3
2140 Male, age 76, both hemispheres 23.3
Pretectal area
nTPM: 25.5
2667 Female, age 75, unknown 29.5
2007 Male, age 72, unknown 29.2
1817 Female, age 42, unknown 28.8
1816 Male, age 51, unknown 28.0
1944 Female, age 72, unknown 27.1
1815 Male, age 53, unknown 25.9
2273 Male, age 74, both hemispheres 23.7
2407 Male, age 75, both hemispheres 23.2
2825 Male, age 18, unknown 22.2
2224 Female, age 72, unknown 21.8
2316 Male, age 76, right hemisphere 20.8
Red nucleus
nTPM: 23.1
2785 Male, age 18, unknown 26.3
1865 Male, age 51, unknown 24.1
1904 Male, age 53, unknown 24.1
1821 Female, age 72, unknown 23.8
1954 Female, age 42, unknown 23.8
2227 Male, age 72, unknown 23.2
2584 Male, age 75, left hemisphere 22.8
2588 Male, age 74, left hemisphere 22.4
2503 Female, age 72, unknown 22.0
2725 Female, age 75, unknown 22.0
2769 Male, age 72, unknown 21.5
2823 Male, age 76, right hemisphere 20.9
Substantia nigra
nTPM: 25.0
1916 Female, age 42, unknown 28.9
1941 Male, age 53, unknown 27.8
2241 Male, age 72, unknown 27.4
2409 Female, age 72, unknown 27.3
1851 Male, age 51, unknown 24.7
2583 Male, age 75, right hemisphere 24.3
2590 Female, age 75, unknown 23.4
1889 Female, age 72, unknown 23.0
2665 Male, age 74, both hemispheres 22.7
2699 Male, age 18, unknown 20.5
Superior colliculus
nTPM: 23.1
2664 Male, age 75, both hemispheres 29.7
2261 Male, age 18, unknown 26.4
1796 Male, age 53, unknown 24.8
2087 Female, age 72, unknown 24.1
1839 Male, age 51, unknown 22.7
1913 Female, age 42, unknown 22.3
1995 Male, age 72, unknown 21.2
2668 Female, age 75, unknown 20.3
1895 Male, age 76, right hemisphere 19.7
2587 Male, age 74, left hemisphere 19.7
Ventral tegmental area
nTPM: 22.5
2410 Female, age 72, unknown 24.8
2223 Female, age 72, unknown 24.4
1915 Female, age 42, unknown 23.4
2218 Male, age 76, both hemispheres 22.0
2021 Male, age 53, unknown 20.4
1942 Male, age 51, unknown 19.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.8
Samples: 139

Max nTPM: 62.6
Min nTPM: 12.5
Std nTPM: 6.6
Median nTPM: 25.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 62.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 47.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 46.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 39.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 39.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 39.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 38.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 37.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 37.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 37.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 36.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.0
FF:10158-103A5 76 years, female 42.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.8
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.8
Sample A Female 20.4
Sample B Female 16.8
Sample C Male 19.2
Sample D Male 18.6
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 20.3
Min nTPM: 14.6
Sample A Female 18.6
Sample B Female 16.3
Sample C Male 20.3
Sample D Male 14.6
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 15.4
Min nTPM: 13.9
Sample B Female 15.3
Sample C Male 15.4
Sample D Male 13.9
Superior colliculi
nTPM: 17.5
Samples: 4

Max nTPM: 18.7
Min nTPM: 16.9
Sample A Female 17.2
Sample B Female 16.9
Sample C Male 18.7
Sample D Male 17.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.1
Sample A Male 1.2
Sample B Male 1.3
Sample C Female 1.1
Sample D Female 1.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68797709 Antisense, RP_050215_01_A03, Mouse strain C57BL/6J (56 days, male) 0.6

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