MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.2 nTPM
HPA Brain:35.9 nTPM
GTEx:21.2 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:36.6 nTPM
Mouse:23.6 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.8
2586 Male, age 75, left hemisphere 39.7
2666 Male, age 74, left hemisphere 34.8
2411 Female, age 72, unknown 34.7
1827 Male, age 72, unknown 32.9
2019 Male, age 18, unknown 32.5
1870 Female, age 42, unknown 30.0
1833 Male, age 53, unknown 29.3
2828 Female, age 72, unknown 28.9
1830 Male, age 51, unknown 28.2
2219 Male, age 76, both hemispheres 26.9
Dorsal raphe nucleus
nTPM: 33.3
2298 Female, age 72, unknown 37.9
2047 Male, age 72, unknown 36.1
1828 Male, age 53, unknown 32.6
2750 Male, age 76, both hemispheres 31.9
2016 Female, age 72, unknown 28.4
Inferior colliculus
nTPM: 31.8
2097 Female, age 72, unknown 36.2
1890 Male, age 53, unknown 31.6
1848 Female, age 42, unknown 30.0
2849 Male, age 72, unknown 29.6
Median raphe nucleus
nTPM: 35.9
2220 Male, age 76, midline 35.9
Periaquaductal grey, anterior
nTPM: 34.5
2502 Female, age 75, unknown 37.7
1947 Male, age 18, unknown 33.5
1795 Male, age 51, unknown 32.3
Periaquaductal grey, dorsal
nTPM: 30.6
1840 Male, age 53, unknown 32.9
2464 Female, age 72, unknown 30.0
2850 Male, age 76, both hemispheres 30.0
1831 Male, age 72, unknown 29.4
Periaquaductal grey, lateral
nTPM: 28.1
2140 Male, age 76, both hemispheres 30.8
2053 Male, age 18, unknown 27.9
2272 Male, age 74, both hemispheres 25.7
Pretectal area
nTPM: 31.9
2007 Male, age 72, unknown 35.6
1816 Male, age 51, unknown 35.1
2667 Female, age 75, unknown 33.0
1944 Female, age 72, unknown 32.6
2407 Male, age 75, both hemispheres 32.1
1817 Female, age 42, unknown 31.8
2825 Male, age 18, unknown 31.7
1815 Male, age 53, unknown 31.1
2316 Male, age 76, right hemisphere 31.1
2224 Female, age 72, unknown 30.7
2273 Male, age 74, both hemispheres 25.6
Red nucleus
nTPM: 30.5
2584 Male, age 75, left hemisphere 36.1
1821 Female, age 72, unknown 32.2
1904 Male, age 53, unknown 31.8
2785 Male, age 18, unknown 31.4
2227 Male, age 72, unknown 31.2
2769 Male, age 72, unknown 30.6
1954 Female, age 42, unknown 30.4
2588 Male, age 74, left hemisphere 30.4
1865 Male, age 51, unknown 29.2
2823 Male, age 76, right hemisphere 29.1
2503 Female, age 72, unknown 27.6
2725 Female, age 75, unknown 26.3
Substantia nigra
nTPM: 33.9
1916 Female, age 42, unknown 44.4
1851 Male, age 51, unknown 36.4
1941 Male, age 53, unknown 35.6
2241 Male, age 72, unknown 35.4
2665 Male, age 74, both hemispheres 33.6
1889 Female, age 72, unknown 32.6
2583 Male, age 75, right hemisphere 32.1
2590 Female, age 75, unknown 30.1
2699 Male, age 18, unknown 29.2
2409 Female, age 72, unknown 29.1
Superior colliculus
nTPM: 30.6
2087 Female, age 72, unknown 34.6
2668 Female, age 75, unknown 34.4
2261 Male, age 18, unknown 34.0
2664 Male, age 75, both hemispheres 33.0
1796 Male, age 53, unknown 32.1
1895 Male, age 76, right hemisphere 30.8
1839 Male, age 51, unknown 29.5
2587 Male, age 74, left hemisphere 27.8
1913 Female, age 42, unknown 25.2
1995 Male, age 72, unknown 24.5
Ventral tegmental area
nTPM: 33.8
2410 Female, age 72, unknown 36.3
1942 Male, age 51, unknown 36.0
2218 Male, age 76, both hemispheres 35.7
1915 Female, age 42, unknown 35.6
2021 Male, age 53, unknown 30.0
2223 Female, age 72, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.2
Samples: 139

Max nTPM: 39.1
Min nTPM: 9.6
Std nTPM: 5.7
Median nTPM: 20.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 32.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 31.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 31.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 31.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 30.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 30.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 30.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.9
FF:10158-103A5 76 years, female 25.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.0
Samples: 4

Max nTPM: 37.6
Min nTPM: 24.5
Sample A Female 37.6
Sample B Female 25.5
Sample C Male 36.3
Sample D Male 24.5
Midbrain
nTPM: 35.0
Samples: 4

Max nTPM: 50.7
Min nTPM: 24.4
Sample A Female 31.2
Sample B Female 24.4
Sample C Male 50.7
Sample D Male 33.7
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 24.5
Min nTPM: 20.0
Sample B Female 22.6
Sample C Male 24.5
Sample D Male 20.0
Superior colliculi
nTPM: 36.6
Samples: 4

Max nTPM: 47.1
Min nTPM: 31.9
Sample A Female 34.0
Sample B Female 33.4
Sample C Male 47.1
Sample D Male 31.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.6
Samples: 4

Max nTPM: 25.2
Min nTPM: 22.3
Sample A Male 22.3
Sample B Male 22.9
Sample C Female 23.8
Sample D Female 25.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
75774663 Antisense, RP_060601_01_B08, Mouse strain C57BL/6J (56 days, male) 3.2

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