MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.6 nTPM
HPA Brain:33.4 nTPM
GTEx:33.6 nTPM
FANTOM5:51.8 Scaled Tags Per Million
Pig:83.3 nTPM
Mouse:34.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.1
2019 Male, age 18, unknown 46.5
1827 Male, age 72, unknown 31.0
2586 Male, age 75, left hemisphere 30.9
2411 Female, age 72, unknown 29.8
2666 Male, age 74, left hemisphere 28.9
2828 Female, age 72, unknown 28.1
2219 Male, age 76, both hemispheres 27.0
1870 Female, age 42, unknown 26.5
1833 Male, age 53, unknown 26.4
1830 Male, age 51, unknown 25.7
Dorsal raphe nucleus
nTPM: 31.2
1828 Male, age 53, unknown 36.0
2047 Male, age 72, unknown 32.6
2298 Female, age 72, unknown 30.9
2016 Female, age 72, unknown 28.5
2750 Male, age 76, both hemispheres 27.9
Inferior colliculus
nTPM: 30.0
1890 Male, age 53, unknown 31.4
2097 Female, age 72, unknown 31.4
1848 Female, age 42, unknown 29.7
2849 Male, age 72, unknown 27.7
Median raphe nucleus
nTPM: 26.5
2220 Male, age 76, midline 26.5
Periaquaductal grey, anterior
nTPM: 27.8
1795 Male, age 51, unknown 28.8
2502 Female, age 75, unknown 27.7
1947 Male, age 18, unknown 26.8
Periaquaductal grey, dorsal
nTPM: 26.7
2850 Male, age 76, both hemispheres 29.7
1840 Male, age 53, unknown 26.4
1831 Male, age 72, unknown 25.4
2464 Female, age 72, unknown 25.3
Periaquaductal grey, lateral
nTPM: 27.5
2272 Male, age 74, both hemispheres 31.3
2140 Male, age 76, both hemispheres 26.5
2053 Male, age 18, unknown 24.6
Pretectal area
nTPM: 31.9
1817 Female, age 42, unknown 45.8
2007 Male, age 72, unknown 40.7
1816 Male, age 51, unknown 36.1
1815 Male, age 53, unknown 33.7
2667 Female, age 75, unknown 31.9
1944 Female, age 72, unknown 29.2
2273 Male, age 74, both hemispheres 29.1
2407 Male, age 75, both hemispheres 27.4
2316 Male, age 76, right hemisphere 27.0
2224 Female, age 72, unknown 26.9
2825 Male, age 18, unknown 23.5
Red nucleus
nTPM: 31.2
2785 Male, age 18, unknown 38.5
1821 Female, age 72, unknown 36.8
2769 Male, age 72, unknown 31.6
2503 Female, age 72, unknown 31.1
2584 Male, age 75, left hemisphere 30.7
2725 Female, age 75, unknown 30.0
2227 Male, age 72, unknown 29.7
2823 Male, age 76, right hemisphere 29.6
1865 Male, age 51, unknown 29.5
1904 Male, age 53, unknown 29.5
2588 Male, age 74, left hemisphere 29.1
1954 Female, age 42, unknown 28.8
Substantia nigra
nTPM: 33.4
1916 Female, age 42, unknown 38.2
1851 Male, age 51, unknown 36.4
2590 Female, age 75, unknown 35.8
2665 Male, age 74, both hemispheres 35.7
1889 Female, age 72, unknown 35.1
2583 Male, age 75, right hemisphere 32.9
1941 Male, age 53, unknown 31.3
2409 Female, age 72, unknown 31.2
2699 Male, age 18, unknown 29.5
2241 Male, age 72, unknown 27.6
Superior colliculus
nTPM: 28.3
2587 Male, age 74, left hemisphere 32.1
1796 Male, age 53, unknown 31.0
2664 Male, age 75, both hemispheres 30.5
2087 Female, age 72, unknown 29.3
1839 Male, age 51, unknown 27.9
1995 Male, age 72, unknown 27.9
2668 Female, age 75, unknown 26.7
1895 Male, age 76, right hemisphere 26.6
1913 Female, age 42, unknown 25.8
2261 Male, age 18, unknown 24.8
Ventral tegmental area
nTPM: 29.4
2410 Female, age 72, unknown 34.4
2218 Male, age 76, both hemispheres 32.7
1915 Female, age 42, unknown 29.2
1942 Male, age 51, unknown 27.4
2223 Female, age 72, unknown 27.0
2021 Male, age 53, unknown 25.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.6
Samples: 139

Max nTPM: 66.4
Min nTPM: 15.0
Std nTPM: 8.5
Median nTPM: 32.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 66.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 64.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 63.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 58.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 52.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 49.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 48.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 48.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 48.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 48.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 48.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.8
FF:10158-103A5 76 years, female 51.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.1
Samples: 4

Max nTPM: 83.0
Min nTPM: 53.1
Sample A Female 83.0
Sample B Female 53.1
Sample C Male 70.3
Sample D Male 61.9
Midbrain
nTPM: 77.6
Samples: 4

Max nTPM: 93.3
Min nTPM: 59.7
Sample A Female 82.8
Sample B Female 59.7
Sample C Male 93.3
Sample D Male 74.5
Periaqueductal gray
nTPM: 60.3
Samples: 3

Max nTPM: 64.2
Min nTPM: 55.4
Sample B Female 61.2
Sample C Male 64.2
Sample D Male 55.4
Superior colliculi
nTPM: 83.3
Samples: 4

Max nTPM: 96.7
Min nTPM: 69.9
Sample A Female 86.6
Sample B Female 69.9
Sample C Male 96.7
Sample D Male 80.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.3
Samples: 4

Max nTPM: 35.7
Min nTPM: 32.2
Sample A Male 32.2
Sample B Male 33.9
Sample C Female 35.7
Sample D Female 35.2

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