MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.0 nTPM
HPA Brain:17.9 nTPM
GTEx:4.0 nTPM
FANTOM5:12.7 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:6.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.7
1833 Male, age 53, unknown 14.1
2586 Male, age 75, left hemisphere 13.3
2666 Male, age 74, left hemisphere 12.7
1827 Male, age 72, unknown 12.1
2019 Male, age 18, unknown 11.1
1830 Male, age 51, unknown 10.8
2219 Male, age 76, both hemispheres 10.8
2828 Female, age 72, unknown 10.8
2411 Female, age 72, unknown 10.5
1870 Female, age 42, unknown 10.2
Dorsal raphe nucleus
nTPM: 13.7
2047 Male, age 72, unknown 17.9
2298 Female, age 72, unknown 14.3
2016 Female, age 72, unknown 13.2
1828 Male, age 53, unknown 11.6
2750 Male, age 76, both hemispheres 11.5
Inferior colliculus
nTPM: 14.5
1848 Female, age 42, unknown 16.8
2849 Male, age 72, unknown 16.3
2097 Female, age 72, unknown 12.7
1890 Male, age 53, unknown 12.0
Median raphe nucleus
nTPM: 14.2
2220 Male, age 76, midline 14.2
Periaquaductal grey, anterior
nTPM: 12.6
2502 Female, age 75, unknown 14.0
1795 Male, age 51, unknown 12.9
1947 Male, age 18, unknown 11.0
Periaquaductal grey, dorsal
nTPM: 17.9
1840 Male, age 53, unknown 22.3
2850 Male, age 76, both hemispheres 19.7
1831 Male, age 72, unknown 17.4
2464 Female, age 72, unknown 12.3
Periaquaductal grey, lateral
nTPM: 14.9
2140 Male, age 76, both hemispheres 16.5
2053 Male, age 18, unknown 15.2
2272 Male, age 74, both hemispheres 12.9
Pretectal area
nTPM: 15.9
2407 Male, age 75, both hemispheres 22.5
2273 Male, age 74, both hemispheres 19.5
1944 Female, age 72, unknown 18.4
1815 Male, age 53, unknown 15.9
1816 Male, age 51, unknown 15.6
2007 Male, age 72, unknown 15.4
2224 Female, age 72, unknown 14.7
2316 Male, age 76, right hemisphere 14.6
2825 Male, age 18, unknown 14.1
1817 Female, age 42, unknown 13.9
2667 Female, age 75, unknown 10.5
Red nucleus
nTPM: 9.9
2725 Female, age 75, unknown 13.3
2584 Male, age 75, left hemisphere 11.9
2785 Male, age 18, unknown 11.9
2588 Male, age 74, left hemisphere 10.9
1904 Male, age 53, unknown 10.0
2823 Male, age 76, right hemisphere 9.8
2503 Female, age 72, unknown 9.2
1821 Female, age 72, unknown 9.1
1865 Male, age 51, unknown 9.1
1954 Female, age 42, unknown 8.1
2769 Male, age 72, unknown 7.9
2227 Male, age 72, unknown 7.6
Substantia nigra
nTPM: 11.2
2409 Female, age 72, unknown 13.9
1889 Female, age 72, unknown 13.8
2583 Male, age 75, right hemisphere 12.5
2699 Male, age 18, unknown 12.3
2665 Male, age 74, both hemispheres 11.9
1851 Male, age 51, unknown 10.6
2241 Male, age 72, unknown 10.4
1916 Female, age 42, unknown 9.4
2590 Female, age 75, unknown 9.0
1941 Male, age 53, unknown 8.6
Superior colliculus
nTPM: 15.3
2668 Female, age 75, unknown 18.5
2664 Male, age 75, both hemispheres 17.4
1995 Male, age 72, unknown 16.5
2587 Male, age 74, left hemisphere 15.3
2087 Female, age 72, unknown 15.2
1839 Male, age 51, unknown 15.0
1796 Male, age 53, unknown 14.7
2261 Male, age 18, unknown 14.6
1895 Male, age 76, right hemisphere 13.8
1913 Female, age 42, unknown 12.3
Ventral tegmental area
nTPM: 12.7
2223 Female, age 72, unknown 16.2
1942 Male, age 51, unknown 14.9
2021 Male, age 53, unknown 14.2
1915 Female, age 42, unknown 11.1
2218 Male, age 76, both hemispheres 10.2
2410 Female, age 72, unknown 9.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.0
Samples: 139

Max nTPM: 7.4
Min nTPM: 1.8
Std nTPM: 0.9
Median nTPM: 3.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 7.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 6.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 6.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 5.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 5.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 5.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 5.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 5.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 5.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 5.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 5.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.7
FF:10158-103A5 76 years, female 12.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.0
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 11.5
Sample C Male 11.6
Sample D Male 11.3
Midbrain
nTPM: 10.6
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 10.3
Sample C Male 11.9
Sample D Male 10.8
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 16.5
Min nTPM: 12.8
Sample B Female 12.8
Sample C Male 16.5
Sample D Male 15.5
Superior colliculi
nTPM: 9.4
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.5
Sample A Female 9.1
Sample B Female 10.4
Sample C Male 8.5
Sample D Male 9.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.6
Sample A Male 6.1
Sample B Male 7.2
Sample C Female 5.6
Sample D Female 6.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74357599 Antisense, RP_060119_03_A02, Mouse strain C57BL/6J (56 days, male) 0.4
80343348 Antisense, RP_071203_01_H08, Mouse strain C57BL/6J (56 days, male) 0.1

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