MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.9 nTPM
HPA Brain:12.6 nTPM
GTEx:6.9 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:9.5 nTPM
Mouse:39.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.5
2019 Male, age 18, unknown 12.1
1827 Male, age 72, unknown 11.8
2666 Male, age 74, left hemisphere 11.8
2411 Female, age 72, unknown 11.4
2586 Male, age 75, left hemisphere 11.4
1870 Female, age 42, unknown 10.3
1833 Male, age 53, unknown 9.6
2219 Male, age 76, both hemispheres 8.9
2828 Female, age 72, unknown 8.8
1830 Male, age 51, unknown 8.5
Dorsal raphe nucleus
nTPM: 10.6
2298 Female, age 72, unknown 12.7
2750 Male, age 76, both hemispheres 11.7
2047 Male, age 72, unknown 10.4
1828 Male, age 53, unknown 10.0
2016 Female, age 72, unknown 7.9
Inferior colliculus
nTPM: 10.5
2097 Female, age 72, unknown 13.6
1890 Male, age 53, unknown 10.8
1848 Female, age 42, unknown 9.5
2849 Male, age 72, unknown 7.9
Median raphe nucleus
nTPM: 12.6
2220 Male, age 76, midline 12.6
Periaquaductal grey, anterior
nTPM: 11.0
1795 Male, age 51, unknown 11.2
1947 Male, age 18, unknown 10.9
2502 Female, age 75, unknown 10.9
Periaquaductal grey, dorsal
nTPM: 9.3
1840 Male, age 53, unknown 9.4
2850 Male, age 76, both hemispheres 9.4
2464 Female, age 72, unknown 9.3
1831 Male, age 72, unknown 9.1
Periaquaductal grey, lateral
nTPM: 9.4
2053 Male, age 18, unknown 9.9
2140 Male, age 76, both hemispheres 9.2
2272 Male, age 74, both hemispheres 9.2
Pretectal area
nTPM: 12.6
1816 Male, age 51, unknown 17.2
1944 Female, age 72, unknown 15.6
2007 Male, age 72, unknown 15.5
1817 Female, age 42, unknown 15.4
1815 Male, age 53, unknown 14.0
2224 Female, age 72, unknown 11.3
2667 Female, age 75, unknown 11.0
2273 Male, age 74, both hemispheres 10.4
2316 Male, age 76, right hemisphere 9.9
2407 Male, age 75, both hemispheres 9.3
2825 Male, age 18, unknown 9.1
Red nucleus
nTPM: 10.4
1821 Female, age 72, unknown 13.1
2785 Male, age 18, unknown 11.9
1954 Female, age 42, unknown 10.9
2503 Female, age 72, unknown 10.6
1904 Male, age 53, unknown 10.5
2588 Male, age 74, left hemisphere 10.3
1865 Male, age 51, unknown 10.1
2769 Male, age 72, unknown 9.9
2227 Male, age 72, unknown 9.8
2823 Male, age 76, right hemisphere 9.5
2725 Female, age 75, unknown 9.4
2584 Male, age 75, left hemisphere 9.2
Substantia nigra
nTPM: 11.6
1889 Female, age 72, unknown 14.8
2241 Male, age 72, unknown 14.4
1916 Female, age 42, unknown 13.9
1851 Male, age 51, unknown 12.5
1941 Male, age 53, unknown 11.7
2409 Female, age 72, unknown 11.2
2583 Male, age 75, right hemisphere 11.2
2590 Female, age 75, unknown 9.4
2699 Male, age 18, unknown 8.9
2665 Male, age 74, both hemispheres 7.9
Superior colliculus
nTPM: 11.3
2668 Female, age 75, unknown 16.7
2261 Male, age 18, unknown 13.7
2087 Female, age 72, unknown 12.7
1796 Male, age 53, unknown 12.3
1913 Female, age 42, unknown 10.5
1895 Male, age 76, right hemisphere 10.1
2664 Male, age 75, both hemispheres 9.6
2587 Male, age 74, left hemisphere 9.2
1839 Male, age 51, unknown 9.1
1995 Male, age 72, unknown 8.9
Ventral tegmental area
nTPM: 10.8
2410 Female, age 72, unknown 13.5
2218 Male, age 76, both hemispheres 11.2
1915 Female, age 42, unknown 10.7
2223 Female, age 72, unknown 10.4
1942 Male, age 51, unknown 10.3
2021 Male, age 53, unknown 8.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.9
Samples: 139

Max nTPM: 16.1
Min nTPM: 3.0
Std nTPM: 2.2
Median nTPM: 6.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 14.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 13.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 13.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 12.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 11.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 11.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 10.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 10.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 10.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 10.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.2
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.2
Sample A Female 9.2
Sample B Female 5.3
Sample C Male 9.1
Sample D Male 5.2
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 13.7
Min nTPM: 6.4
Sample A Female 7.4
Sample B Female 6.4
Sample C Male 13.7
Sample D Male 10.6
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 8.0
Min nTPM: 5.8
Sample B Female 5.8
Sample C Male 8.0
Sample D Male 6.1
Superior colliculi
nTPM: 9.3
Samples: 4

Max nTPM: 12.7
Min nTPM: 4.8
Sample A Female 10.6
Sample B Female 4.8
Sample C Male 12.7
Sample D Male 9.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 41.2
Min nTPM: 37.2
Sample A Male 37.2
Sample B Male 38.4
Sample C Female 41.2
Sample D Female 40.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69817841 Antisense, RP_050510_03_H04, Mouse strain C57BL/6J (56 days, male) 0.1

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