MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.1 nTPM
HPA Brain:43.2 nTPM
GTEx:13.1 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:15.1 nTPM
Mouse:20.8 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.8
2666 Male, age 74, left hemisphere 47.1
1830 Male, age 51, unknown 43.4
2019 Male, age 18, unknown 41.9
1833 Male, age 53, unknown 40.9
2219 Male, age 76, both hemispheres 37.9
1870 Female, age 42, unknown 37.3
2411 Female, age 72, unknown 36.6
2828 Female, age 72, unknown 36.1
1827 Male, age 72, unknown 34.3
2586 Male, age 75, left hemisphere 32.7
Dorsal raphe nucleus
nTPM: 33.2
2750 Male, age 76, both hemispheres 38.4
2016 Female, age 72, unknown 33.8
1828 Male, age 53, unknown 33.6
2047 Male, age 72, unknown 31.9
2298 Female, age 72, unknown 28.1
Inferior colliculus
nTPM: 36.2
1890 Male, age 53, unknown 37.4
2097 Female, age 72, unknown 37.0
2849 Male, age 72, unknown 35.3
1848 Female, age 42, unknown 35.1
Median raphe nucleus
nTPM: 35.4
2220 Male, age 76, midline 35.4
Periaquaductal grey, anterior
nTPM: 33.8
2502 Female, age 75, unknown 37.7
1947 Male, age 18, unknown 35.9
1795 Male, age 51, unknown 27.7
Periaquaductal grey, dorsal
nTPM: 32.6
2464 Female, age 72, unknown 34.9
1831 Male, age 72, unknown 32.1
2850 Male, age 76, both hemispheres 32.0
1840 Male, age 53, unknown 31.3
Periaquaductal grey, lateral
nTPM: 31.4
2053 Male, age 18, unknown 32.0
2140 Male, age 76, both hemispheres 31.3
2272 Male, age 74, both hemispheres 31.0
Pretectal area
nTPM: 36.3
1817 Female, age 42, unknown 44.6
1815 Male, age 53, unknown 41.8
2007 Male, age 72, unknown 40.3
1816 Male, age 51, unknown 38.3
1944 Female, age 72, unknown 37.8
2224 Female, age 72, unknown 36.9
2316 Male, age 76, right hemisphere 34.5
2667 Female, age 75, unknown 34.4
2407 Male, age 75, both hemispheres 33.5
2825 Male, age 18, unknown 33.4
2273 Male, age 74, both hemispheres 24.3
Red nucleus
nTPM: 43.2
2588 Male, age 74, left hemisphere 50.2
1865 Male, age 51, unknown 47.2
1821 Female, age 72, unknown 46.6
2503 Female, age 72, unknown 45.8
2785 Male, age 18, unknown 44.5
2823 Male, age 76, right hemisphere 42.8
1904 Male, age 53, unknown 41.5
2769 Male, age 72, unknown 41.0
2584 Male, age 75, left hemisphere 40.2
2725 Female, age 75, unknown 39.8
1954 Female, age 42, unknown 39.3
2227 Male, age 72, unknown 39.1
Substantia nigra
nTPM: 37.9
2241 Male, age 72, unknown 44.6
2409 Female, age 72, unknown 41.8
2665 Male, age 74, both hemispheres 40.2
1889 Female, age 72, unknown 39.9
2699 Male, age 18, unknown 38.2
1851 Male, age 51, unknown 38.1
2583 Male, age 75, right hemisphere 35.2
2590 Female, age 75, unknown 34.7
1916 Female, age 42, unknown 34.1
1941 Male, age 53, unknown 32.6
Superior colliculus
nTPM: 37.6
1913 Female, age 42, unknown 41.5
2668 Female, age 75, unknown 40.9
1895 Male, age 76, right hemisphere 39.8
1995 Male, age 72, unknown 39.7
2087 Female, age 72, unknown 37.9
1839 Male, age 51, unknown 36.6
2587 Male, age 74, left hemisphere 36.3
2664 Male, age 75, both hemispheres 36.1
1796 Male, age 53, unknown 34.7
2261 Male, age 18, unknown 32.7
Ventral tegmental area
nTPM: 36.5
2410 Female, age 72, unknown 39.8
2021 Male, age 53, unknown 38.0
1915 Female, age 42, unknown 37.6
2223 Female, age 72, unknown 36.7
1942 Male, age 51, unknown 34.1
2218 Male, age 76, both hemispheres 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.1
Samples: 139

Max nTPM: 18.8
Min nTPM: 8.4
Std nTPM: 2.2
Median nTPM: 12.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 18.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 18.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 17.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 17.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 17.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 16.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 16.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 16.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 16.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.5
FF:10158-103A5 76 years, female 49.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.9
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.0
Sample A Female 13.3
Sample B Female 12.0
Sample C Male 12.8
Sample D Male 17.3
Midbrain
nTPM: 15.0
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.9
Sample A Female 15.8
Sample B Female 15.9
Sample C Male 13.9
Sample D Male 14.3
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 13.0
Min nTPM: 10.7
Sample B Female 13.0
Sample C Male 10.7
Sample D Male 12.1
Superior colliculi
nTPM: 15.1
Samples: 4

Max nTPM: 16.2
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 14.4
Sample C Male 16.2
Sample D Male 15.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 21.7
Min nTPM: 19.7
Sample A Male 19.7
Sample B Male 20.9
Sample C Female 21.7
Sample D Female 21.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69170264 Antisense, RP_050329_01_A04, Mouse strain C57BL/6J (56 days, male) 2.2

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